View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10104A_low_335 (Length: 230)
Name: NF10104A_low_335
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104A_low_335 |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 12 - 224
Target Start/End: Complemental strand, 30286887 - 30286675
Alignment:
| Q |
12 |
attttctttgaaattatgtagcgagtcaacaacctttttagagtctattccaaaatcaattggtcctaagtgcaattcgtgaacccatcgcaaagcggag |
111 |
Q |
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| T |
30286887 |
attttctttgaaattatgtagcgagtcaacaacctttttagagtctattccaaaatcaattggacctaagtgcaattcgtgaacccatcacaaagcggag |
30286788 |
T |
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| Q |
112 |
accggagagtagatcaagagtttcacaaacatccacattgcaaataggaataaatgattcagcttttgcaaagacaaaacaaccttgatcatcctgaatg |
211 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30286787 |
accggagagtagatcaagagtttcacaaacatccacgttgcaaataggaataaatgattcagcttttgcaaagacaaaacaaccttgatcatcctgaatg |
30286688 |
T |
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| Q |
212 |
caaatgccaatat |
224 |
Q |
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||||||||||||| |
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| T |
30286687 |
caaatgccaatat |
30286675 |
T |
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