View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10104A_low_340 (Length: 230)
Name: NF10104A_low_340
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104A_low_340 |
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| [»] scaffold0519 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 109; Significance: 6e-55; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 49420055 - 49419923
Alignment:
| Q |
1 |
aagtttgctggaaaaacttatgtggggtgaactcatgttaaatctaatgtataggtgaaaaaggataaaattggcatttttaaatatttgtatgggtgaa |
100 |
Q |
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| T |
49420055 |
aagtttgttggaaaaacttatgtggggtgaactcatgttaaatctaatgtatgggtgtaaaaggataaaattggcatttttaaatatttgtatggatgaa |
49419956 |
T |
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| Q |
101 |
ggtataagtgtaggggtaccatataaaatttcc |
133 |
Q |
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| T |
49419955 |
ggtataagtgtaggggtaccaagtaaaatttcc |
49419923 |
T |
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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 118
Target Start/End: Complemental strand, 31261901 - 31261841
Alignment:
| Q |
58 |
aaaaaggataaaattggcatttttaaatatttgtatgggtgaaggtataagtgtaggggta |
118 |
Q |
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| T |
31261901 |
aaaaagggtaaaattggaatttttcataatttgtaaggatgaaagtataagtgtaggggta |
31261841 |
T |
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Target: scaffold0519 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: scaffold0519
Description:
Target: scaffold0519; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 134 - 225
Target Start/End: Complemental strand, 125 - 34
Alignment:
| Q |
134 |
tttaatttattggttaatgggcctaaatggattgggccaatgtgatctatgcttgatgtccaaccacaagctagacagtgtgtgacctattt |
225 |
Q |
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| T |
125 |
tttaatttattggttaatgggcctatatggattgggccaatgtgatctatgcttgatgtccaaccacaaggtagacggtgtgtgacctattt |
34 |
T |
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Target: chr8 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 134 - 225
Target Start/End: Original strand, 11234299 - 11234390
Alignment:
| Q |
134 |
tttaatttattggttaatgggcctaaatggattgggccaatgtgatctatgcttgatgtccaaccacaagctagacagtgtgtgacctattt |
225 |
Q |
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| T |
11234299 |
tttaatttattggttaatgggcctatatggattgggccaatgtgatctatgcttgatgtccaaccacaaggtagacggtgtgtgacctattt |
11234390 |
T |
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Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 54 - 133
Target Start/End: Original strand, 26440474 - 26440553
Alignment:
| Q |
54 |
ggtgaaaaaggataaaattggcatttttaaatatttgtatgggtgaaggtataagtgtaggggtaccatataaaatttcc |
133 |
Q |
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| T |
26440474 |
ggtgaaaatggataaaattggcattttcaaatatttgtaagggtgaaagtataattgtaggggtgcaatgtaaaatttcc |
26440553 |
T |
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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 118
Target Start/End: Complemental strand, 51779192 - 51779133
Alignment:
| Q |
59 |
aaaaggataaaattggcatttttaaatatttgtatgggtgaaggtataagtgtaggggta |
118 |
Q |
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| T |
51779192 |
aaaaggataaaattggaattttgaaaaatttgtaagggtgaaagtatatgtgtaggggta |
51779133 |
T |
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