View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10104A_low_346 (Length: 230)
Name: NF10104A_low_346
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104A_low_346 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 7 - 230
Target Start/End: Complemental strand, 29013767 - 29013544
Alignment:
| Q |
7 |
gaaatatgcataatatcagctcgtggagtaagagcatcacattcactatggaaacgtcaatggtatgctattggttgggttgatccaaccaacaaataca |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29013767 |
gaaatatgcataatatcagctcgtggagtaagagcatcacattcactatggaaacgtcaatggtatgctattggttgggttgatccaaccaacaaataca |
29013668 |
T |
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| Q |
107 |
taaccaaagttgatgcttcaaccaacacaaaccctctttggagaacaaagttttccattcaagttgataactctgatccaaattttcatgatcttgcatt |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29013667 |
taaccaaagttgatgcttcaaccaacacaaaccctctttggagaacaaagttttccattcaagttgataactctgatccaaattttcatgatcttgcatt |
29013568 |
T |
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| Q |
207 |
gaatgttgaagtttatagcagaga |
230 |
Q |
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|||||||||||||||||||||||| |
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| T |
29013567 |
gaatgttgaagtttatagcagaga |
29013544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 7 - 230
Target Start/End: Complemental strand, 29366455 - 29366232
Alignment:
| Q |
7 |
gaaatatgcataatatcagctcgtggagtaagagcatcacattcactatggaaacgtcaatggtatgctattggttgggttgatccaaccaacaaataca |
106 |
Q |
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||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29366455 |
gaaatatgcttaatatcagctcgaggagtaagagcatcacattcactatggaaacgtcaatggtatgctattggttgggttgatccaaccaacaaataca |
29366356 |
T |
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| Q |
107 |
taaccaaagttgatgcttcaaccaacacaaaccctctttggagaacaaagttttccattcaagttgataactctgatccaaattttcatgatcttgcatt |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29366355 |
taaccaaagttgatgcttcaaccaacacaaaccctctttggagaacaaagttttccattcaagttgataactctgatccaaattttcatgatcttgcatt |
29366256 |
T |
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| Q |
207 |
gaatgttgaagtttatagcagaga |
230 |
Q |
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|||||||||||||||||||||||| |
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| T |
29366255 |
gaatgttgaagtttatagcagaga |
29366232 |
T |
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Back To:
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