View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10104A_low_349 (Length: 229)
Name: NF10104A_low_349
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104A_low_349 |
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Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 32724700 - 32724922
Alignment:
| Q |
1 |
agagagatagacaaagaagaaacatgagaagacaagaatgatacagagatgatgggtttacatgtttattagagaaagagtaatttttgttttgtatcaa |
100 |
Q |
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| T |
32724700 |
agagagatagacaaagaagaaacatgagaagacaagaatgatagagagattatgggtttacatgtttattagagaaagagtaatttttgttttgtatcaa |
32724799 |
T |
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| Q |
101 |
tggtgacacaagttatttgggttaacgggctttttagaaaggggttgaaggtagtggatgttaaaagattctttctcagcatttcacggttcagagaaaa |
200 |
Q |
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|||||||| ||||||||||||||||| ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
32724800 |
tggtgacataagttatttgggttaacaggctttttagaaaggtgttgaaggtaatggatgttaaaagattctttctcagcatttcatggttcagagaaaa |
32724899 |
T |
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| Q |
201 |
aagtatggttcttatgtctagac |
223 |
Q |
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|||||||||||||||||| |||| |
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| T |
32724900 |
aagtatggttcttatgtcaagac |
32724922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 20 - 207
Target Start/End: Original strand, 32723264 - 32723453
Alignment:
| Q |
20 |
aaacatgagaagacaagaatgatacagagatgatgggtttacatgtttattagagaaagagtaatttttgttttgtatcaatggtgacacaagttatttg |
119 |
Q |
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||||||||||||||| ||| |||| |||||||||||||||||| ||||| |||||||| ||||||||||||||| ||| ||||||||||||||||||||| |
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| T |
32723264 |
aaacatgagaagacaggaaagatagagagatgatgggtttacaggtttagtagagaaacagtaatttttgttttatattaatggtgacacaagttatttg |
32723363 |
T |
|
| Q |
120 |
ggt--taacgggctttttagaaaggggttgaaggtagtggatgttaaaagattctttctcagcatttcacggttcagagaaaaaagtatg |
207 |
Q |
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| T |
32723364 |
agttataacatgtttttgagaaaggtgttgaaggtagtggatgttacaagattctttatcagcatttcatggttcagatgaaaaagtatg |
32723453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 84 - 223
Target Start/End: Original strand, 4001942 - 4002081
Alignment:
| Q |
84 |
tttttgttttgtatcaatggtgacacaagttatttgggttaacgggctttttagaaaggggttgaaggtagtggatgttaaaagattctttctcagcatt |
183 |
Q |
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||||| |||| |||||||||| || |||||||||||||||||| | |||| |||||| ||||||||||||||||||||||||||||||||||| ||| |
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| T |
4001942 |
ttttttttttttatcaatggtaacgcaagttatttgggttaacatgtttttgagaaagatgttgaaggtagtggatgttaaaagattctttctcataatt |
4002041 |
T |
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| Q |
184 |
tcacggttcagagaaaaaagtatggttcttatgtctagac |
223 |
Q |
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| T |
4002042 |
tcatggtttagagaaaaaagtatggttcttatgcctagac |
4002081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 115; Significance: 1e-58; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 15719970 - 15720179
Alignment:
| Q |
1 |
agagagatagacaaagaagaaacatgagaagacaagaatgatacagagatgatgggtttacatgtttattagagaaagagtaa-tttttgttttgtatca |
99 |
Q |
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||||||| ||||| |||| ||||||||||||||||||| |||| ||||||||||||| |||| ||||| |||||||||||||| |||||||||||||| | |
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| T |
15719970 |
agagagacagacatagaacaaacatgagaagacaagaaagatagagagatgatgggtgtacaggtttagtagagaaagagtaattttttgttttgtatta |
15720069 |
T |
|
| Q |
100 |
atggtgacacaagttatttgggt--taacgggctttttagaaaggggttgaaggtagtggatgttaaaagattctttctcagcatttcacggttcagaga |
197 |
Q |
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||||||||||||||||||||||| |||| | |||| ||||||| |||||||||||||||||||| ||||||||||||||| |||||| |||||||| |
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| T |
15720070 |
atggtgacacaagttatttgggttataacaagtttttgagaaaggtgttgaaggtagtggatgttacaagattctttctcagtatttcatggttcagatg |
15720169 |
T |
|
| Q |
198 |
aaaaagtatg |
207 |
Q |
| |
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|||||||||| |
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|
| T |
15720170 |
aaaaagtatg |
15720179 |
T |
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