View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10104A_low_35 (Length: 420)
Name: NF10104A_low_35
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104A_low_35 |
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Alignment Details
Target: chr3 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 7 - 405
Target Start/End: Complemental strand, 40751884 - 40751486
Alignment:
| Q |
7 |
aatggaagattctatgataatacaccttctagttctcttgcctcttggaattttgcttctatgtcaacaaaaccaaacactactactgcttctactattt |
106 |
Q |
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| T |
40751884 |
aatggaagattctatgataatacaccttctagttctcttgcctcttggaattttgcttctatgtcaacaaaaccaaacactactactgcttctactattt |
40751785 |
T |
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| Q |
107 |
taccggataattgcatcacaagaaaaggatctaatgtttataaaggctcggatagatcatttctctacagaatctgtccgaatcaagcattctcatcact |
206 |
Q |
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| T |
40751784 |
taccggataattgcatcacaagaaaaggatctaatgtttataaaggctcggatagatcatttctctacagaatctgtccaaatcaagcattctcatcact |
40751685 |
T |
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| Q |
207 |
tccaaattacaagagggttgctccaaatgcttttggttttttaaattcttctgatgatggaaggataaagaaggatttggtgagtagtttatgtgataac |
306 |
Q |
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| T |
40751684 |
tccaaattacaagagggttgctccaaatgcttttggttttttaaattcttctgatgatggaaggataaagaaggatttggtgagtagtttatgtgataac |
40751585 |
T |
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| Q |
307 |
tcatcaacattaatcacaaacttaaagtcttccatggagaaagagcaagatcgcgatgaggtcgaaattgagcatcacaaagaagttccattcattgat |
405 |
Q |
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| T |
40751584 |
tcatctacattaatcacaaacttaaagtcttccatggagaaagagcaagatcgcgatgaggtcgaaattgagcatcacaaagaagttccattcattgat |
40751486 |
T |
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