View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10104A_low_350 (Length: 229)
Name: NF10104A_low_350
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104A_low_350 |
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Alignment Details
Target: chr6 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 84 - 225
Target Start/End: Complemental strand, 12045208 - 12045067
Alignment:
| Q |
84 |
tggacaaatatcaccaaaataaaaattaatagaacaaatgttgtgagtgacaccaacctagatctcaaccaaaaagcacaatagcgttattccgtcacgg |
183 |
Q |
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| T |
12045208 |
tggacaaatatcgccaaaataaaaattaatagaacaaatgttgtgagtgacaccaacctagatctcaaccaaaaagcacaatagcgttattccgtcacgg |
12045109 |
T |
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| Q |
184 |
tggaagtgatttacacctttatcaacctcctcccaagttgta |
225 |
Q |
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| T |
12045108 |
tggaagtgatttacacctttatcaacctcctcccaagttgta |
12045067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 12045260 - 12045207
Alignment:
| Q |
2 |
caaacatgtgaagtgatggagaagaagcacatgagatgagagggaggaacagtg |
55 |
Q |
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| T |
12045260 |
caaacatgtgaagtgatggagaagaagcacatgagatgagagggaggaacagtg |
12045207 |
T |
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