View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10104A_low_353 (Length: 229)

Name: NF10104A_low_353
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10104A_low_353
NF10104A_low_353
[»] scaffold0466 (1 HSPs)
scaffold0466 (1-223)||(4356-4579)
[»] chr8 (8 HSPs)
chr8 (1-221)||(25809392-25809616)
chr8 (139-223)||(25622055-25622139)
chr8 (17-75)||(22881700-22881758)
chr8 (12-89)||(12843479-12843556)
chr8 (159-221)||(15177504-15177565)
chr8 (5-75)||(19342201-19342271)
chr8 (17-223)||(20706977-20707193)
chr8 (161-219)||(15752937-15752997)
[»] chr7 (4 HSPs)
chr7 (5-187)||(10677571-10677753)
chr7 (96-201)||(23135039-23135145)
chr7 (5-74)||(10646489-10646558)
chr7 (108-165)||(19650613-19650670)
[»] chr3 (6 HSPs)
chr3 (15-74)||(4698636-4698695)
chr3 (12-75)||(4668164-4668227)
chr3 (15-56)||(5797947-5797988)
chr3 (5-62)||(14426914-14426971)
chr3 (5-74)||(20311371-20311440)
chr3 (18-74)||(10686948-10687004)
[»] chr4 (7 HSPs)
chr4 (155-223)||(35150307-35150376)
chr4 (5-75)||(23692972-23693042)
chr4 (155-223)||(17743804-17743873)
chr4 (17-74)||(24715705-24715762)
chr4 (162-201)||(16404213-16404253)
chr4 (155-223)||(20748472-20748541)
chr4 (5-117)||(35150146-35150258)
[»] chr1 (7 HSPs)
chr1 (5-90)||(20816934-20817018)
chr1 (106-180)||(12893015-12893089)
chr1 (159-223)||(12900397-12900463)
chr1 (5-74)||(22669063-22669132)
chr1 (155-223)||(34488414-34488483)
chr1 (5-74)||(40817022-40817091)
chr1 (24-72)||(12889285-12889333)
[»] chr2 (5 HSPs)
chr2 (5-75)||(27483828-27483898)
chr2 (12-74)||(35511875-35511937)
chr2 (5-74)||(18115064-18115133)
chr2 (9-75)||(26712906-26712972)
chr2 (136-168)||(16748227-16748259)
[»] chr5 (2 HSPs)
chr5 (146-187)||(19990723-19990764)
chr5 (12-74)||(16687130-16687192)


Alignment Details
Target: scaffold0466 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: scaffold0466
Description:

Target: scaffold0466; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 4356 - 4579
Alignment:
Q  1 atgttaacaaagtataaaagaacaattggatactttaatgtatgttcgagtgtgcaagaccatataattaaa-ttccgaattcatagtcaactcactgat 99  Q
    ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||  ||||||||||||||| | ||||    
T  4356 atgttaacaaagtataaaataacaattggatactctaatgtatgttcgagtgtgcaggaccatataattaaaattctaaattcatagtcaacttattgat 4455  T
Q  100 tttgaaacatcaagctctaaagaaaaatgaaagcattttggtacccaagagaagctctgaagacttagaagatgatctgaagaaaggtaacaaaaagtta 199  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  4456 tttgaaacatcaagctctaaagaaaaatgaaagtattttggtacccaagagaagctctgaagacttagaagatgatctgaagaaaggcaacaaaaagtta 4555  T
Q  200 aatatctgaacagaagatgcatca 223  Q
    ||||| |||| |||||||||||||    
T  4556 aatatttgaatagaagatgcatca 4579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 135; Significance: 2e-70; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 25809616 - 25809392
Alignment:
Q  1 atgttaacaaagtataaaagaacaattggatactttaatgtatgttcgagtgtgcaagaccatataattaaattccgaattcatagtcaactcactgatt 100  Q
    |||||||||||||||||||||| ||||||||||| |||||| |||||||||||||  ||| |||||||||||| |||| ||||||||||| | | || ||    
T  25809616 atgttaacaaagtataaaagaataattggatactctaatgtgtgttcgagtgtgccggactatataattaaatcccgacttcatagtcaagttattgctt 25809517  T
Q  101 ttgaaacatcaagctctaaagaaaaatgaaagcattttggta-cccaagagaagc---tctgaagacttagaagatgatctgaagaaaggtaacaaaaag 196  Q
    |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||   ||||||||||||||||||||| |||||||||  |||||||||    
T  25809516 ttgaaacatcaagctctaaagacaaatgaaagcattttggtaccccaagagaagctcttctgaagacttagaagatgatttgaagaaagacaacaaaaag 25809417  T
Q  197 ttaaatatctgaacagaagatgcat 221  Q
    | |||||||||||||||||||||||    
T  25809416 tcaaatatctgaacagaagatgcat 25809392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 139 - 223
Target Start/End: Complemental strand, 25622139 - 25622055
Alignment:
Q  139 ggtacccaagagaagctctgaagacttagaagatgatctgaagaaaggtaacaaaaagttaaatatctgaacagaagatgcatca 223  Q
    |||||| ||||||||||||||||||||||||| ||||| ||||||||| |||||||||| |||||| |||||| |||||||||||    
T  25622139 ggtaccaaagagaagctctgaagacttagaaggtgatcagaagaaaggcaacaaaaagtcaaatatttgaacaaaagatgcatca 25622055  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 22881758 - 22881700
Alignment:
Q  17 aaagaacaattggatactttaatgtatgttcgagtgtgcaagaccatataattaaattc 75  Q
    |||||||||||||||||| |||||| ||||| |||||| | ||||||||||||||||||    
T  22881758 aaagaacaattggatactctaatgtgtgttctagtgtgtatgaccatataattaaattc 22881700  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 89
Target Start/End: Complemental strand, 12843556 - 12843479
Alignment:
Q  12 gtataaaagaacaattggatactttaatgtatgttcgagtgtgcaagaccatataattaaattccgaattcatagtca 89  Q
    |||| |||||| ||||||||||  |||||| ||||| |||||||| |||||||||||||||||| || |||| |||||    
T  12843556 gtatgaaagaataattggatacgctaatgtgtgttcaagtgtgcaggaccatataattaaattctgacttcaaagtca 12843479  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 221
Target Start/End: Original strand, 15177504 - 15177565
Alignment:
Q  159 aagacttagaagatgatctgaagaaaggtaacaaaaagttaaatatctgaacagaagatgcat 221  Q
    ||||||||||||||||| ||||||||||| | ||||||| ||| |||| | ||||||||||||    
T  15177504 aagacttagaagatgatatgaagaaaggtta-aaaaagtcaaagatctaatcagaagatgcat 15177565  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 75
Target Start/End: Original strand, 19342201 - 19342271
Alignment:
Q  5 taacaaagtataaaagaacaattggatactttaatgtatgttcgagtgtgcaagaccatataattaaattc 75  Q
    |||||| |||| |||||||||||||||||   ||||| ||||| ||||||||  |||||| ||||||||||    
T  19342201 taacaatgtatgaaagaacaattggatacacaaatgtgtgttcaagtgtgcagtaccataaaattaaattc 19342271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 223
Target Start/End: Complemental strand, 20707193 - 20706977
Alignment:
Q  17 aaagaacaattggatactttaatgtatgttcgagtgtgcaagaccatataattaaattccgaattcatagtcaactcactgattttgaaacatcaagctc 116  Q
    ||||||||||| |||||| |||||| ||||| |||||| | ||||||||||| ||||   || |||| |||||| |   || || | | ||||||| |||    
T  20707193 aaagaacaattagatactctaatgtgtgttcaagtgtgtaggaccatataatcaaatcatgacttcaaagtcaagttt-tggttctaatacatcaaactc 20707095  T
Q  117 taaagaaaaatgaaagcattttggtacccaagagaagct----------ctgaagacttagaagatgatctgaagaaaggt-aacaaaaagttaaatatc 205  Q
    | ||   |||||||||||||||||||| || ||||||||          ||||||||||||| |||||| |||||| |||| || |||||||||||| |     
T  20707094 tgaatgtaaatgaaagcattttggtactcatgagaagctatgaagacttctgaagacttagaggatgatatgaagataggtcaataaaaagttaaatttt 20706995  T
Q  206 tgaacagaagatgcatca 223  Q
    | | ||||||||||||||    
T  20706994 ttatcagaagatgcatca 20706977  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 219
Target Start/End: Complemental strand, 15752997 - 15752937
Alignment:
Q  161 gacttagaagatgatctgaagaaaggt-aac-aaaaagttaaatatctgaacagaagatgc 219  Q
    |||||| |||||||||||||||||||| ||| |||||||||||  ||||| ||||||||||    
T  15752997 gacttataagatgatctgaagaaaggtcaacaaaaaagttaaagctctgatcagaagatgc 15752937  T

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Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 5 - 187
Target Start/End: Complemental strand, 10677753 - 10677571
Alignment:
Q  5 taacaaagtataaaagaacaattggatactttaatgtatgttcgagtgtgcaagaccatataattaaattccgaattcatagtcaactcactgattttga 104  Q
    |||||| ||||  |||||||||||| |||||||| || ||||  | |||||| |||||||||||||||||  || | || |||||| | | || || |||    
T  10677753 taacaaggtatgcaagaacaattgggtactttaaggtgtgtttaaatgtgcatgaccatataattaaattttgactccaaagtcaagttattggttctga 10677654  T
Q  105 aacatcaagctctaaagaaaaatgaaagcattttggtacccaagagaagctctgaagacttagaagatgatctgaagaaaggt 187  Q
    ||||| ||||||| ||   |||  ||||||| ||||||| ||||||||||| ||||||| ||||||||||||| ||| |||||    
T  10677653 aacattaagctctgaacgcaaagtaaagcatcttggtactcaagagaagctttgaagacatagaagatgatctaaagtaaggt 10677571  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 96 - 201
Target Start/End: Original strand, 23135039 - 23135145
Alignment:
Q  96 tgattttgaaacatcaagctctaaagaaaaatgaaagcattttggtacccaagagaagctctgaagacttagaagatgatctgaagaaag-gtaacaaaa 194  Q
    ||||| ||||| ||||| |||||||   ||| |||||||||||||||| ||||||||| ||||||||||||||| ||| ||| |||||||  ||||||||    
T  23135039 tgattatgaaatatcaaactctaaacgtaaaggaaagcattttggtactcaagagaagttctgaagacttagaacatgttctaaagaaagtttaacaaaa 23135138  T
Q  195 agttaaa 201  Q
    |||||||    
T  23135139 agttaaa 23135145  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 74
Target Start/End: Original strand, 10646489 - 10646558
Alignment:
Q  5 taacaaagtataaaagaacaattggatactttaatgtatgttcgagtgtgcaagaccatataattaaatt 74  Q
    |||||||||||  || ||||||||||||  ||||  ||||||| |||||||| ||||||||||| |||||    
T  10646489 taacaaagtattgaataacaattggatatgttaacatatgttcaagtgtgcaggaccatataataaaatt 10646558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 165
Target Start/End: Complemental strand, 19650670 - 19650613
Alignment:
Q  108 atcaagctctaaagaaaaatgaaagcattttggtacccaagagaagctctgaagactt 165  Q
    |||||||||| || | ||| |||| ||||||||||| ||||||||||| |||||||||    
T  19650670 atcaagctctgaacacaaaggaaaacattttggtactcaagagaagctatgaagactt 19650613  T

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Target: chr3 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 15 - 74
Target Start/End: Original strand, 4698636 - 4698695
Alignment:
Q  15 taaaagaacaattggatactttaatgtatgttcgagtgtgcaagaccatataattaaatt 74  Q
    |||||||||||||| ||||| |||||||||||| ||||||||| |||||| |||||||||    
T  4698636 taaaagaacaattgaatactctaatgtatgttcaagtgtgcaaaaccataaaattaaatt 4698695  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 75
Target Start/End: Original strand, 4668164 - 4668227
Alignment:
Q  12 gtataaaagaacaattggatactttaatgtatgttcgagtgtgcaagaccatataattaaattc 75  Q
    ||||||||||||| |||||||||||||||||| ||  | | ||||| |||||| ||||||||||    
T  4668164 gtataaaagaacagttggatactttaatgtatctttaaatatgcaaaaccataaaattaaattc 4668227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 56
Target Start/End: Original strand, 5797947 - 5797988
Alignment:
Q  15 taaaagaacaattggatactttaatgtatgttcgagtgtgca 56  Q
    ||||||||||||||||||  ||||||||||||| ||||||||    
T  5797947 taaaagaacaattggatatgttaatgtatgttcaagtgtgca 5797988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 14426914 - 14426971
Alignment:
Q  5 taacaaagtataaaagaacaattggatactttaatgtatgttcgagtgtgcaagacca 62  Q
    ||||||||||| ||||||||||||||||   |||| ||||||| |||||||| |||||    
T  14426914 taacaaagtattaaagaacaattggatatgctaatatatgttcaagtgtgcaggacca 14426971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 74
Target Start/End: Original strand, 20311371 - 20311440
Alignment:
Q  5 taacaaagtataaaagaacaattggatactttaatgtatgttcgagtgtgcaagaccatataattaaatt 74  Q
    |||||||||||  |||||||||||||||   |||| ||||||| |||||||| ||||||| ||| |||||    
T  20311371 taacaaagtatttaagaacaattggatatgctaatatatgttcaagtgtgcatgaccataaaataaaatt 20311440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 10687004 - 10686948
Alignment:
Q  18 aagaacaattggatactttaatgtatgttcgagtgtgcaagaccatataattaaatt 74  Q
    |||||| ||||||||  || |||| ||||| |||||||| |||||||||||||||||    
T  10687004 aagaacgattggatatattgatgtgtgttcaagtgtgcaggaccatataattaaatt 10686948  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 155 - 223
Target Start/End: Original strand, 35150307 - 35150376
Alignment:
Q  155 tctgaagacttagaagatgatctgaagaaaggt-aacaaaaagttaaatatctgaacagaagatgcatca 223  Q
    ||||||||||||||||||||| ||||||||||| |||||||| |||||  |||||  |||||||||||||    
T  35150307 tctgaagacttagaagatgatatgaagaaaggtcaacaaaaaattaaagttctgattagaagatgcatca 35150376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 23693042 - 23692972
Alignment:
Q  5 taacaaagtataaaagaacaattggatactttaatgtatgttcgagtgtgcaagaccatataattaaattc 75  Q
    |||||| |||| ||| ||||||||| |||| |||||| ||||| || | ||||||||||||||||||||||    
T  23693042 taacaatgtatgaaataacaattgggtactctaatgtgtgttcaagcgagcaagaccatataattaaattc 23692972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 223
Target Start/End: Complemental strand, 17743873 - 17743804
Alignment:
Q  155 tctgaagacttagaagatgatctgaagaaaggt-aacaaaaagttaaatatctgaacagaagatgcatca 223  Q
    ||||||||||||| ||||||||||||||||||| |||||||||| |||  ||||| ||||| ||| ||||    
T  17743873 tctgaagacttagcagatgatctgaagaaaggtcaacaaaaagtcaaagctctgatcagaaaatgtatca 17743804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 74
Target Start/End: Original strand, 24715705 - 24715762
Alignment:
Q  17 aaagaacaattggatactttaatgtatgttcgagtgtgcaagaccatataattaaatt 74  Q
    ||||||||||||| |||| |||||| ||||| | |||||||||||||| |||||||||    
T  24715705 aaagaacaattgggtactctaatgtgtgttcaattgtgcaagaccatacaattaaatt 24715762  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 201
Target Start/End: Original strand, 16404213 - 16404253
Alignment:
Q  162 acttagaagatgatctgaagaaaggt-aacaaaaagttaaa 201  Q
    |||||||||||||||||||||||||| ||||||||||||||    
T  16404213 acttagaagatgatctgaagaaaggtcaacaaaaagttaaa 16404253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 223
Target Start/End: Complemental strand, 20748541 - 20748472
Alignment:
Q  155 tctgaagacttagaagatgatctgaagaaagg-taacaaaaagttaaatatctgaacagaagatgcatca 223  Q
    |||||||||||| ||||||||||||| ||||| ||| |||||||||||  | |||  |||||||||||||    
T  20748541 tctgaagacttaaaagatgatctgaaaaaaggttaataaaaagttaaagctttgattagaagatgcatca 20748472  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 117
Target Start/End: Original strand, 35150146 - 35150258
Alignment:
Q  5 taacaaagtataaaagaacaattggatactttaatgtatgttcgagtgtgcaagaccatataattaaattccgaattcatagtcaactcactgattttga 104  Q
    |||||| |||| ||| ||||||||  ||||||| ||| ||||| || |||||| |||||| || ||||||| || |||| |||||| |   || || |||    
T  35150146 taacaatgtatgaaataacaattgagtactttagtgtgtgttcaagggtgcaataccataaaactaaattctgacttcaaagtcaagttgttggttctga 35150245  T
Q  105 aacatcaagctct 117  Q
    |||||||||||||    
T  35150246 aacatcaagctct 35150258  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 90
Target Start/End: Original strand, 20816934 - 20817018
Alignment:
Q  5 taacaaagtataaaagaacaattggatactttaatgtatgttcgagtgtgcaagaccatataattaaattccgaattcatagtcaa 90  Q
    |||||| |||| |||||||||||| |||| ||||||| ||||  |||||||| ||||||| |||||||||| ||||||| ||||||    
T  20816934 taacaatgtatgaaagaacaattgaatac-ttaatgtgtgttgaagtgtgcaggaccataaaattaaattctgaattcaaagtcaa 20817018  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 106 - 180
Target Start/End: Original strand, 12893015 - 12893089
Alignment:
Q  106 acatcaagctctaaagaaaaatgaaagcattttggtacccaagagaagctctgaagacttagaagatgatctgaa 180  Q
    ||||||||||  ||| | ||| ||||| |||||||||| ||| ||||| | ||||||||||||||||||||||||    
T  12893015 acatcaagctagaaacacaaaggaaagtattttggtactcaaaagaagttatgaagacttagaagatgatctgaa 12893089  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 223
Target Start/End: Original strand, 12900397 - 12900463
Alignment:
Q  159 aagacttagaagatgatctgaagaaaggt-aac-aaaaagttaaatatctgaacagaagatgcatca 223  Q
    ||||||||||||||||||||||||||||| ||| |||||||||||  ||||| || || ||||||||    
T  12900397 aagacttagaagatgatctgaagaaaggtcaacaaaaaagttaaagttctgatcataatatgcatca 12900463  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 74
Target Start/End: Original strand, 22669063 - 22669132
Alignment:
Q  5 taacaaagtataaaagaacaattggatactttaatgtatgttcgagtgtgcaagaccatataattaaatt 74  Q
    |||||| |||| |||||| |||| | |||| |||| | ||||| |||||||| |||||||||||||||||    
T  22669063 taacaatgtatgaaagaagaatttggtactctaatatttgttcaagtgtgcaggaccatataattaaatt 22669132  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 223
Target Start/End: Complemental strand, 34488483 - 34488414
Alignment:
Q  155 tctgaagacttagaagatgatctgaagaaaggt-aacaaaaagttaaatatctgaacagaagatgcatca 223  Q
    ||||||||  |||||||| ||||||||||| || ||| |||||| |||| ||||| ||||||||||||||    
T  34488483 tctgaagaactagaagattatctgaagaaaagtcaacgaaaagtcaaatctctgatcagaagatgcatca 34488414  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 74
Target Start/End: Original strand, 40817022 - 40817091
Alignment:
Q  5 taacaaagtataaaagaacaattggatactttaatgtatgttcgagtgtgcaagaccatataattaaatt 74  Q
    |||||| |||||||||||||||| | ||||||||||||  ||  |||||| | ||| |||||||||||||    
T  40817022 taacaatgtataaaagaacaatttggtactttaatgtacttttaagtgtgtatgactatataattaaatt 40817091  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 12889285 - 12889333
Alignment:
Q  24 aattggatactttaatgtatgttcgagtgtgcaagaccatataattaaa 72  Q
    |||||| |||| |||||| ||||| |||||||||||| |||||||||||    
T  12889285 aattgggtactctaatgtgtgttcaagtgtgcaagactatataattaaa 12889333  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 5 - 75
Target Start/End: Original strand, 27483828 - 27483898
Alignment:
Q  5 taacaaagtataaaagaacaattggatactttaatgtatgttcgagtgtgcaagaccatataattaaattc 75  Q
    ||||||||| | ||||||||||| ||||  ||||||| ||||| |||||||| ||||||| ||||||||||    
T  27483828 taacaaagtttgaaagaacaatttgatatattaatgtgtgttcaagtgtgcaggaccataaaattaaattc 27483898  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 12 - 74
Target Start/End: Original strand, 35511875 - 35511937
Alignment:
Q  12 gtataaaagaacaattggatactttaatgtatgttcgagtgtgcaagaccatataattaaatt 74  Q
    ||||||||||| |||| |||||| |||||||||||| ||| | ||||||||||| ||||||||    
T  35511875 gtataaaagaataatttgatactctaatgtatgttcaagtatacaagaccatatgattaaatt 35511937  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 74
Target Start/End: Complemental strand, 18115133 - 18115064
Alignment:
Q  5 taacaaagtataaaagaacaattggatactttaatgtatgttcgagtgtgcaagaccatataattaaatt 74  Q
    |||||| ||||||||||| |||||| |||| |||||| || || |||||||| ||| |||||||||||||    
T  18115133 taacaacgtataaaagaataattgggtactctaatgtgtgctcaagtgtgcatgactatataattaaatt 18115064  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 26712972 - 26712906
Alignment:
Q  9 aaagtataaaagaacaattggatactttaatgtatgttcgagtgtgcaagaccatataattaaattc 75  Q
    |||||||||||||||||||| |||   |||| | ||||| |||||| | ||||||||||||||||||    
T  26712972 aaagtataaaagaacaattgaatatgctaatatgtgttcaagtgtgtatgaccatataattaaattc 26712906  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 168
Target Start/End: Original strand, 16748227 - 16748259
Alignment:
Q  136 tttggtacccaagagaagctctgaagacttaga 168  Q
    |||||||| ||||||||||||||||||||||||    
T  16748227 tttggtactcaagagaagctctgaagacttaga 16748259  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 187
Target Start/End: Complemental strand, 19990764 - 19990723
Alignment:
Q  146 aagagaagctctgaagacttagaagatgatctgaagaaaggt 187  Q
    ||||||| ||||||||||||||||||||||| ||||||||||    
T  19990764 aagagaaactctgaagacttagaagatgatcagaagaaaggt 19990723  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 74
Target Start/End: Original strand, 16687130 - 16687192
Alignment:
Q  12 gtataaaagaacaattggatactttaatgtatgttcgagtgtgcaagaccatataattaaatt 74  Q
    |||| |||||| |||||| |||| |||||| ||||  |||||||||||||||| |||||||||    
T  16687130 gtatgaaagaataattgggtactctaatgtgtgtttaagtgtgcaagaccatagaattaaatt 16687192  T

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