View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10104A_low_354 (Length: 229)
Name: NF10104A_low_354
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104A_low_354 |
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Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 4123945 - 4123722
Alignment:
| Q |
1 |
atcaagaaaaagtgataatgatccttcttcaggacattattcagctagtcttgaaagattggatgcaccagaagttttcatttggtatgataagaaaatt |
100 |
Q |
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| T |
4123945 |
atcaagaaaaagtgataatgatccttcttcaggacattattcagctagtcttgaaagattggatgcaccagaagttttcatttggtatgataagaaaatt |
4123846 |
T |
|
| Q |
101 |
cattggagaactggtccatggaatggattggtttttctcggaacaccgagtatgttaaccaagtatttacacggttggcattttgttcaagacaatgatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4123845 |
cattggagaactggtccatggaatggattggtttttctcggaacaccgagtatgttaaccaagtatttacacggttggcattttgttcaagacaatgatg |
4123746 |
T |
|
| Q |
201 |
gaactacttatattacttacaatt |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
4123745 |
gaactacttatattacttacaatt |
4123722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 4153295 - 4153072
Alignment:
| Q |
1 |
atcaagaaaaagtgataatgatccttcttcaggacattattcagctagtcttgaaagattggatgcaccagaagttttcatttggtatgataagaaaatt |
100 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| || ||| |
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| T |
4153295 |
atcaagaaaaagtgataatgatccttcttcaggacattattcagctagtcttgaaagattggatgcaccagaagttttcatttggaaagataaaaatatt |
4153196 |
T |
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| Q |
101 |
cattggagaactggtccatggaatggattggtttttctcggaacaccgagtatgttaaccaagtatttacacggttggcattttgttcaagacaatgatg |
200 |
Q |
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| T |
4153195 |
cattggagaacaggtccatggaatggaagggtttttctcggatcaccgagaatgttaaccgagtatttagccggttggcgttttgatcaagacactgatg |
4153096 |
T |
|
| Q |
201 |
gaactacttatattacttacaatt |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
4153095 |
gaactacttatattacttacaatt |
4153072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 4163648 - 4163438
Alignment:
| Q |
1 |
atcaagaaaaagtgataatgatccttcttcaggacattattcagctagtcttgaaagattggatgcaccagaagttttcatttggtatgataagaaaatt |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||| |||| |
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| T |
4163648 |
atcaagaaaaagtgaaaatgatccttcttcaggacattatataggaagtcttgaaagattggatgcaccagaagtttttatttggtatgataagagaatt |
4163549 |
T |
|
| Q |
101 |
cattggagaactggtccatggaatggattggtttttctcggaacaccgagtatgttaaccaagtatttacacggttggcattttgttcaagacaatgatg |
200 |
Q |
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||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||| |||||||| |||||||| ||||| ||||||||| |||| |
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| T |
4163548 |
cattggagaactggtccatggaatggaacggtttttctcggatcaccgagaatgttaaccgagtatttagccggttggcgttttgatcaagacaaagatg |
4163449 |
T |
|
| Q |
201 |
gaactacttat |
211 |
Q |
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||||||||||| |
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| T |
4163448 |
gaactacttat |
4163438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 3 - 144
Target Start/End: Complemental strand, 4134488 - 4134347
Alignment:
| Q |
3 |
caagaaaaagtgataatgatccttcttcaggacattattcagctagtcttgaaagattggatgcaccagaagttttcatttggtatgataagaaaattca |
102 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||| | || |||| ||||||||||||||| ||||||||||||||||||| | ||||| |||||| | |
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| T |
4134488 |
caagaaaaagtgacaatgatccttcttcgggacattttacaattagtgttgaaagattggatgtaccagaagttttcatttggaaagataaaaaaattta |
4134389 |
T |
|
| Q |
103 |
ttggagaactggtccatggaatggattggtttttctcggaac |
144 |
Q |
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| T |
4134388 |
ttggagaactggtccatggaatggaagggtttttctcggaac |
4134347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 3 - 144
Target Start/End: Complemental strand, 4145290 - 4145149
Alignment:
| Q |
3 |
caagaaaaagtgataatgatccttcttcaggacattattcagctagtcttgaaagattggatgcaccagaagttttcatttggtatgataagaaaattca |
102 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||| | || |||| ||||||||||||||| ||||||||||||||||||| | ||||| |||||| | |
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| T |
4145290 |
caagaaaaagtgacaatgatccttcttcgggacattttacaattagtgttgaaagattggatgtaccagaagttttcatttggaaagataaaaaaattta |
4145191 |
T |
|
| Q |
103 |
ttggagaactggtccatggaatggattggtttttctcggaac |
144 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||| |
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| T |
4145190 |
ttggagaactggtccatggaatggaagagtttttctcggaac |
4145149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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