View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10104A_low_358 (Length: 228)
Name: NF10104A_low_358
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104A_low_358 |
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| [»] scaffold0057 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 19 - 206
Target Start/End: Complemental strand, 46844717 - 46844530
Alignment:
| Q |
19 |
ctccaacaatatcctctggtcacggcattcatggctgcaaaatgccatctcacccctgcaatgcaataatgcaactaggttcaagatctcatggtattca |
118 |
Q |
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| T |
46844717 |
ctccaacaacatcctctggtcacggcattcatggctgcaaaatgccatctcacccctgcaatgcaataatgcaactaggttcaagatctcatggtattca |
46844618 |
T |
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| Q |
119 |
ctatcattccttcaaggaatcgttctaattctaatcggacacaaattagcaaatcatactttcctttgatgtaataagacagacacgg |
206 |
Q |
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| T |
46844617 |
ctatcattccttcaaggaatcggtctaattctaatcggacacaaattagcaaattatactttcctttgatgtaataagacagacacgg |
46844530 |
T |
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Target: scaffold0057 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0057
Description:
Target: scaffold0057; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 48931 - 48986
Alignment:
| Q |
19 |
ctccaacaatatcctctggtcacggcattcatggctgcaaaatgccatctcacccc |
74 |
Q |
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| T |
48931 |
ctccaacagtttcctctggttacggcattcagggttgcaaaatgccatctcacccc |
48986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0057; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 28042 - 28099
Alignment:
| Q |
19 |
ctccaacaatatcctctggtcacggcattcatggctgcaaaatgccatctcacccctg |
76 |
Q |
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| T |
28042 |
ctccaacagtttcctctggttacgacattcaaggttgcaaaatgccatctcacgcctg |
28099 |
T |
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