View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10104A_low_362 (Length: 227)

Name: NF10104A_low_362
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10104A_low_362
NF10104A_low_362
[»] chr4 (12 HSPs)
chr4 (76-193)||(46550706-46550823)
chr4 (76-183)||(17056615-17056722)
chr4 (76-190)||(47541809-47541925)
chr4 (76-183)||(41464802-41464911)
chr4 (76-183)||(52920087-52920197)
chr4 (83-178)||(15827131-15827229)
chr4 (76-174)||(47833504-47833603)
chr4 (76-184)||(36364868-36364972)
chr4 (76-183)||(39503504-39503615)
chr4 (76-183)||(20679841-20679951)
chr4 (86-171)||(46381481-46381568)
chr4 (76-148)||(42969971-42970043)
[»] chr1 (10 HSPs)
chr1 (76-183)||(16253029-16253136)
chr1 (76-183)||(24241478-24241585)
chr1 (76-183)||(41942781-41942888)
chr1 (76-183)||(21356794-21356901)
chr1 (76-183)||(34773420-34773528)
chr1 (76-183)||(39744169-39744276)
chr1 (85-189)||(38746028-38746133)
chr1 (76-183)||(2344969-2345077)
chr1 (105-183)||(48503922-48504000)
chr1 (81-183)||(7101359-7101464)
[»] chr3 (9 HSPs)
chr3 (76-183)||(44880254-44880361)
chr3 (76-187)||(1994850-1994961)
chr3 (76-183)||(22220210-22220318)
chr3 (76-182)||(2008400-2008508)
chr3 (76-188)||(22831174-22831286)
chr3 (76-183)||(39056875-39056981)
chr3 (107-183)||(26466362-26466438)
chr3 (76-163)||(28297695-28297782)
chr3 (126-183)||(45805583-45805640)
[»] chr7 (8 HSPs)
chr7 (76-187)||(8541427-8541539)
chr7 (76-183)||(34998528-34998637)
chr7 (76-183)||(10544991-10545100)
chr7 (104-183)||(39187986-39188065)
chr7 (76-183)||(45627414-45627524)
chr7 (126-178)||(32676800-32676852)
chr7 (137-193)||(15878797-15878853)
chr7 (76-135)||(40076693-40076753)
[»] chr8 (11 HSPs)
chr8 (76-187)||(42056676-42056787)
chr8 (76-195)||(30208187-30208307)
chr8 (88-187)||(39402038-39402140)
chr8 (76-188)||(5594779-5594891)
chr8 (76-182)||(1162117-1162222)
chr8 (76-183)||(40719895-40720005)
chr8 (76-188)||(35179155-35179268)
chr8 (76-186)||(31333162-31333273)
chr8 (76-165)||(42921385-42921474)
chr8 (76-139)||(30362018-30362082)
chr8 (83-183)||(36132676-36132776)
[»] chr5 (12 HSPs)
chr5 (76-183)||(33758794-33758901)
chr5 (82-164)||(23151436-23151518)
chr5 (76-188)||(2976446-2976556)
chr5 (76-174)||(34849451-34849550)
chr5 (76-173)||(30319817-30319915)
chr5 (76-183)||(20524604-20524711)
chr5 (76-183)||(10719746-10719854)
chr5 (76-163)||(37872201-37872291)
chr5 (146-186)||(37872302-37872342)
chr5 (78-190)||(8026460-8026577)
chr5 (76-175)||(3454259-3454358)
chr5 (76-134)||(42285218-42285277)
[»] chr2 (10 HSPs)
chr2 (76-183)||(3870024-3870135)
chr2 (76-183)||(11028779-11028887)
chr2 (90-183)||(36400857-36400952)
chr2 (76-189)||(28734070-28734183)
chr2 (76-183)||(37721449-37721557)
chr2 (76-183)||(38879517-38879625)
chr2 (76-183)||(3647418-3647526)
chr2 (76-182)||(30706149-30706258)
chr2 (76-183)||(6512079-6512191)
chr2 (76-137)||(3949317-3949378)
[»] scaffold0095 (1 HSPs)
scaffold0095 (88-187)||(35362-35464)
[»] chr6 (3 HSPs)
chr6 (76-183)||(2141240-2141348)
chr6 (76-188)||(7080148-7080262)
chr6 (89-183)||(25336928-25337023)
[»] scaffold0288 (1 HSPs)
scaffold0288 (104-183)||(18084-18163)
[»] scaffold0009 (1 HSPs)
scaffold0009 (104-191)||(25680-25767)
[»] scaffold1339 (1 HSPs)
scaffold1339 (76-183)||(57-165)


Alignment Details
Target: chr4 (Bit Score: 94; Significance: 5e-46; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 76 - 193
Target Start/End: Original strand, 46550706 - 46550823
Alignment:
Q  76 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 175  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||    
T  46550706 aataataaagagaaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtatgtgtttaaacattattgatttggtcttgtgaccatg 46550805  T
Q  176 gaagaatatctccttatt 193  Q
    ||||||||| || |||||    
T  46550806 gaagaatatttcattatt 46550823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 76 - 183
Target Start/End: Complemental strand, 17056722 - 17056615
Alignment:
Q  76 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttt-tatgtgtgtattcaaacattattgatttggtcttgtgaccat 174  Q
    ||||||||||||||||||||||||||  |||||| |||||||  |||| ||| |||| |||||||||||||||||| |||||||||||||||||||||||    
T  17056722 aataataaagaggaaattgataaaaaa-atgattaaatattttaaggacaattttttatatgtgtgtattcaaacactattgatttggtcttgtgaccat 17056624  T
Q  175 ggaagaata 183  Q
    |||||||||    
T  17056623 ggaagaata 17056615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 76 - 190
Target Start/End: Original strand, 47541809 - 47541925
Alignment:
Q  76 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatcttttta--tgtgtgtattcaaacattattgatttggtcttgtgacca 173  Q
    ||||||||  |||||||||||||||| ||||||||||||||| ||||| ||||||||||  ||||||| | |||| |||||||||||| |||||||| ||    
T  47541809 aataataagaaggaaattgataaaaaagatgattgaatattttgaggaaaatctttttatgtgtgtgtgtccaaatattattgatttgatcttgtgatca 47541908  T
Q  174 tggaagaatatctcctt 190  Q
    || ||||||||||||||    
T  47541909 tgaaagaatatctcctt 47541925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 76 - 183
Target Start/End: Original strand, 41464802 - 41464911
Alignment:
Q  76 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgta--ttcaaacattattgatttggtcttgtgacca 173  Q
    ||||||||||| |||||||||||||| ||||||||| ||||| || |||||||||||||||||||||  || ||  |||||||||||| |||||||||||    
T  41464802 aataataaagaagaaattgataaaaaagatgattgagtattttgaagagaatctttttatgtgtgtatgtttaagtattattgatttgatcttgtgacca 41464901  T
Q  174 tggaagaata 183  Q
    || |||||||    
T  41464902 tgaaagaata 41464911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 76 - 183
Target Start/End: Original strand, 52920087 - 52920197
Alignment:
Q  76 aataataaagaggaaattgat-aaaaatgatgattgaatatttagaggagaatcttttta--tgtgtgtattcaaacattattgatttggtcttgtgacc 172  Q
    |||||||||||| |||||||| |||||  ||||||||||||||  | |  ||||||||||  | | |||||| |||||||||||||||||||||||||||    
T  52920087 aataataaagagaaaattgataaaaaaaaatgattgaatatttttaagtaaatctttttatttatatgtatttaaacattattgatttggtcttgtgacc 52920186  T
Q  173 atggaagaata 183  Q
    |||||||||||    
T  52920187 atggaagaata 52920197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 83 - 178
Target Start/End: Original strand, 15827131 - 15827229
Alignment:
Q  83 aagaggaaattgat-aaaaatgatgattgaatatttagaggagaatctttttatgtg--tgtattcaaacattattgatttggtcttgtgaccatggaa 178  Q
    ||||| |||||||| |||||  || ||||||||||| ||  ||||||||||||||||  |||||||||| |||||||||| ||||||||||||||||||    
T  15827131 aagagaaaattgatgaaaaaaaataattgaatattttgacaagaatctttttatgtgtgtgtattcaaatattattgattcggtcttgtgaccatggaa 15827229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 76 - 174
Target Start/End: Complemental strand, 47833603 - 47833504
Alignment:
Q  76 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgta--ttcaaacattattgatttggtcttgtgacca 173  Q
    ||||||||||||||||||||||||| | |||||||||||||| |||||   ||||||||||||||||  | ||| || ||| |||||||||||| |||||    
T  47833603 aataataaagaggaaattgataaaa-taatgattgaatattttgaggatggtctttttatgtgtgtatgtccaaccactatagatttggtcttgcgacca 47833505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 184
Target Start/End: Original strand, 36364868 - 36364972
Alignment:
Q  76 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 175  Q
    |||| ||||||| |||||||||||||| ||||    ||||||  ||||  || ||||||| ||||| | ||||||||||||||||||||||| |||||||    
T  36364868 aatagtaaagagaaaattgataaaaataatga----atattttaaggaccatatttttatatgtgtgtccaaacattattgatttggtcttgcgaccatg 36364963  T
Q  176 gaagaatat 184  Q
     || |||||    
T  36364964 caacaatat 36364972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 76 - 183
Target Start/End: Original strand, 39503504 - 39503615
Alignment:
Q  76 aataataaagaggaaattgataaaaatgatga--ttgaatatttagaggagaatctttttatgtgt--gtattcaaacattattgatttggtcttgtgac 171  Q
    ||||||||||||||||||||||||||  |  |  || |||||||  | ||  ||||||||||||||  || |||||||| ||||||||| ||||||||||    
T  39503504 aataataaagaggaaattgataaaaaaaaaaaaattaaatattttaaagatcatctttttatgtgtatgtgttcaaacactattgatttagtcttgtgac 39503603  T
Q  172 catggaagaata 183  Q
    ||| ||||||||    
T  39503604 catagaagaata 39503615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 183
Target Start/End: Original strand, 20679841 - 20679951
Alignment:
Q  76 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttt---tatgtgtgtattcaaacattattgatttggtcttgtgacc 172  Q
    ||||||||||||||||||||||||||  || |||||||||||  | ||  || ||||   | ||||||| | |||||| |||||||||| ||||| ||||    
T  20679841 aataataaagaggaaattgataaaaaaaataattgaatattttaaagaccattttttttatgtgtgtgtgtccaaacactattgatttgatcttgagacc 20679940  T
Q  173 atggaagaata 183  Q
    ||| |||||||    
T  20679941 atgaaagaata 20679951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 171
Target Start/End: Complemental strand, 46381568 - 46381481
Alignment:
Q  86 aggaaattgataaaaatgatgattgaatatttagaggagaatctttttatg--tgtgtattcaaacattattgatttggtcttgtgac 171  Q
    ||||||||||||||||  |||||||||| |||  |||| ||||| ||||||  |||||  ||||||| |||| |||||||||||||||    
T  46381568 aggaaattgataaaaaaaatgattgaatgtttttaggataatctctttatgtatgtgtgctcaaacactatttatttggtcttgtgac 46381481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 148
Target Start/End: Complemental strand, 42970043 - 42969971
Alignment:
Q  76 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaa 148  Q
    |||||||||||  |||||||||||||  | ||||||||||||  |||| |||||||||||  |||| ||||||    
T  42970043 aataataaagataaaattgataaaaaaaaagattgaatattttaaggataatctttttatacgtgtgttcaaa 42969971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 5e-40; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 76 - 183
Target Start/End: Complemental strand, 16253136 - 16253029
Alignment:
Q  76 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 175  Q
    |||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||    
T  16253136 aataataaggaggaaattgataaaaaagatgattgaatattttgaggagaatctttttatgtgtgtctccaaacattattgatttggtcttgtgaacatg 16253037  T
Q  176 gaagaata 183  Q
    ||||||||    
T  16253036 gaagaata 16253029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 76 - 183
Target Start/End: Complemental strand, 24241585 - 24241478
Alignment:
Q  76 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 175  Q
    |||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||    
T  24241585 aataataaggaggaaattgataaaaaagatgattgaatattttgaggagaatctttttatgtgtgtgtccaaacattattgatttggtcatgtgaccatg 24241486  T
Q  176 gaagaata 183  Q
    ||||||||    
T  24241485 gaagaata 24241478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 76 - 183
Target Start/End: Complemental strand, 41942888 - 41942781
Alignment:
Q  76 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 175  Q
    |||||||| ||||||||||||||||||||||||||||||||| || |||||||||||||||| ||| | |||||||||||||||||||||||||||||||    
T  41942888 aataataaggaggaaattgataaaaatgatgattgaatatttcgaagagaatctttttatgtatgtgtccaaacattattgatttggtcttgtgaccatg 41942789  T
Q  176 gaagaata 183  Q
     |||||||    
T  41942788 aaagaata 41942781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 76 - 183
Target Start/End: Complemental strand, 21356901 - 21356794
Alignment:
Q  76 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 175  Q
    |||||||| ||| ||||||||||||| ||||||||||||||| || |||||||||||||| ||||| | ||||||||||||||||||||||||||||||     
T  21356901 aataataatgagaaaattgataaaaaagatgattgaatattttgaagagaatctttttatatgtgtgtccaaacattattgatttggtcttgtgaccata 21356802  T
Q  176 gaagaata 183  Q
     |||||||    
T  21356801 aaagaata 21356794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 76 - 183
Target Start/End: Original strand, 34773420 - 34773528
Alignment:
Q  76 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgta--ttcaaacattattgatttggtcttgtgacca 173  Q
    ||||||||| |||||||| |||||||  |||||||||||||| ||||||||||||||||||||||||  | ||||||||||||| |||||||||||| ||    
T  34773420 aataataaa-aggaaattaataaaaaatatgattgaatattttgaggagaatctttttatgtgtgtatgtgcaaacattattgagttggtcttgtgatca 34773518  T
Q  174 tggaagaata 183  Q
    ||||||||||    
T  34773519 tggaagaata 34773528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 76 - 183
Target Start/End: Original strand, 39744169 - 39744276
Alignment:
Q  76 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 175  Q
    |||||||| ||||||| |||||||||  |||||||| ||||  ||| ||||||||||||| ||||| | ||||||||||||||||||||||||||||||     
T  39744169 aataataaggaggaaaatgataaaaaaaatgattgactattctgagaagaatctttttatatgtgtgtccaaacattattgatttggtcttgtgaccata 39744268  T
Q  176 gaagaata 183  Q
    ||||||||    
T  39744269 gaagaata 39744276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 85 - 189
Target Start/End: Original strand, 38746028 - 38746133
Alignment:
Q  85 gaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtat-tcaaacattattgatttggtcttgtgaccatggaagaata 183  Q
    ||||||||||| || || ||||||||||||||| ||||||||||| |||||| |||| | || || |||||||||||||||||||||| ||||||||||     
T  38746028 gaggaaattgaaaacaaagatgattgaatattttgaggagaatctatttatgggtgtgtgtccaaaattattgatttggtcttgtgacgatggaagaatg 38746127  T
Q  184 tctcct 189  Q
    ||||||    
T  38746128 tctcct 38746133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 76 - 183
Target Start/End: Complemental strand, 2345077 - 2344969
Alignment:
Q  76 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtg--tattcaaacattattgatttggtcttgtgacca 173  Q
    ||||| || ||||||||||||||||| ||||||||||| |||  | || ||| ||||||||||||  ||| |||||||||||||||||||||||||||||    
T  2345077 aataagaaggaggaaattgataaaaaagatgattgaattttttaaagaaaat-tttttatgtgtgcttatccaaacattattgatttggtcttgtgacca 2344979  T
Q  174 tggaagaata 183  Q
     |||||||||    
T  2344978 aggaagaata 2344969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 105 - 183
Target Start/End: Complemental strand, 48504000 - 48503922
Alignment:
Q  105 tgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatggaagaata 183  Q
    ||||||| ||||| || ||||||| |||||| ||||| | |||| ||||||||||||||||| ||| ||||||||||||    
T  48504000 tgattgagtattttgatgagaatccttttatatgtgtgtccaaatattattgatttggtcttatgaacatggaagaata 48503922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 183
Target Start/End: Original strand, 7101359 - 7101464
Alignment:
Q  81 taaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtat----tcaaacattattgatttggtcttgtgaccatgg 176  Q
    ||||||||||||||||||||   ||||||||||||||  ||||  |||||||||||||||| |    || |||| ||||||||||||||| ||| |||||    
T  7101359 taaagaggaaattgataaaaga-atgattgaatattttaaggaccatctttttatgtgtgtgtatgttccaacactattgatttggtcttatgatcatgg 7101457  T
Q  177 aagaata 183  Q
     ||||||    
T  7101458 gagaata 7101464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 76 - 183
Target Start/End: Complemental strand, 44880361 - 44880254
Alignment:
Q  76 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 175  Q
    |||||||| ||||||||||||||||| ||||| ||||||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  44880361 aataataaggaggaaattgataaaaaagatgactgaatattttgaggagaatcgttttatgtgtgtgttcaaacattattgatttggtcttgtgaccatg 44880262  T
Q  176 gaagaata 183  Q
     |||||||    
T  44880261 aaagaata 44880254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 76 - 187
Target Start/End: Original strand, 1994850 - 1994961
Alignment:
Q  76 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 175  Q
    ||||||||||||| |||||||||||| |||||||||||||||  |||||||||||||| ||||| | | ||||||||||||||||||||||||||||||     
T  1994850 aataataaagaggtaattgataaaaaagatgattgaatattttcaggagaatctttttgtgtgtttgtccaaacattattgatttggtcttgtgaccata 1994949  T
Q  176 gaagaatatctc 187  Q
    | ||||||||||    
T  1994950 gtagaatatctc 1994961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 76 - 183
Target Start/End: Complemental strand, 22220318 - 22220210
Alignment:
Q  76 aataataaagaggaaattgataaaaat-gatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccat 174  Q
    |||||||| |||||||||||||||||  ||||||||||||||| ||| ||||||||||||||||||| | ||||||||||||||||| |||| |||||||    
T  22220318 aataataaggaggaaattgataaaaaaagatgattgaatattttgagaagaatctttttatgtgtgtgtacaaacattattgatttgatcttttgaccat 22220219  T
Q  175 ggaagaata 183  Q
    |||||||||    
T  22220218 ggaagaata 22220210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 76 - 182
Target Start/End: Complemental strand, 2008508 - 2008400
Alignment:
Q  76 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttt--tatgtgtgtattcaaacattattgatttggtcttgtgacca 173  Q
    |||||||| ||| ||||||||||||| ||||||||||||||| ||||||||||||||  ||||||||| | |||| ||||||||||||||||||||| ||    
T  2008508 aataataaggagaaaattgataaaaaagatgattgaatattttgaggagaatctttttatatgtgtgtgtccaaatattattgatttggtcttgtgatca 2008409  T
Q  174 tggaagaat 182  Q
    |||||||||    
T  2008408 tggaagaat 2008400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 76 - 188
Target Start/End: Original strand, 22831174 - 22831286
Alignment:
Q  76 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 175  Q
    |||||||| ||||||| ||||||||| ||||||||||||||| ||| ||||||||| ||||||||| | |||| ||||||||||| ||||||||||||      
T  22831174 aataataaggaggaaagtgataaaaaagatgattgaatattttgagaagaatctttatatgtgtgtgtccaaatattattgatttagtcttgtgaccaga 22831273  T
Q  176 gaagaatatctcc 188  Q
    |||||||||||||    
T  22831274 gaagaatatctcc 22831286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 76 - 183
Target Start/End: Original strand, 39056875 - 39056981
Alignment:
Q  76 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 175  Q
    |||| ||| ||| |||| |||||||| ||||||||||||||| ||||| ||||||||||||||||| | |||||||||| |||||||||||| || ||||    
T  39056875 aatattaaggagaaaatcgataaaaa-gatgattgaatattttgaggaaaatctttttatgtgtgtgtccaaacattatagatttggtcttgcgatcatg 39056973  T
Q  176 gaagaata 183  Q
    ||||||||    
T  39056974 gaagaata 39056981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 107 - 183
Target Start/End: Original strand, 26466362 - 26466438
Alignment:
Q  107 attgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatggaagaata 183  Q
    |||||||||||  |  ||||||||||||| | ||| ||||||||||||| ||||| |||||||||||||||||||||    
T  26466362 attgaatattttaaaaagaatctttttatatatgtgttcaaacattattaatttgatcttgtgaccatggaagaata 26466438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 163
Target Start/End: Complemental strand, 28297782 - 28297695
Alignment:
Q  76 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggt 163  Q
    |||||||||||||||||||||||||   ||||| |||||| |  |||||||||||||||| | | | | ||||| |||||||||||||    
T  28297782 aataataaagaggaaattgataaaagaaatgatcgaatatgttaaggagaatctttttatatatatgtccaaactttattgatttggt 28297695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 183
Target Start/End: Original strand, 45805583 - 45805640
Alignment:
Q  126 atctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatggaagaata 183  Q
    |||||||||||||||| | |||||| |||||||||| |||||| | ||||||||||||    
T  45805583 atctttttatgtgtgtgtgcaaacactattgatttgatcttgtaatcatggaagaata 45805640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 7e-36; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 76 - 187
Target Start/End: Complemental strand, 8541539 - 8541427
Alignment:
Q  76 aataataaagaggaaattgataaaaa-tgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccat 174  Q
    |||||||| ||||||||||||||||| | |||||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  8541539 aataataaggaggaaattgataaaaaataatgattgaatattttgaggagaatctttttacgtgtgtgttcaaacattattgatttggtcttgtgaccat 8541440  T
Q  175 ggaagaatatctc 187  Q
      |||||||||||    
T  8541439 aaaagaatatctc 8541427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 76 - 183
Target Start/End: Complemental strand, 34998637 - 34998528
Alignment:
Q  76 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttt--tatgtgtgtattcaaacattattgatttggtcttgtgacca 173  Q
    |||||||| ||| |||||||||||||| |||||||||||||| ||||||||||||||  ||||||||| | |||||||||||||||||||||||||||||    
T  34998637 aataataaggagaaaattgataaaaataatgattgaatattttgaggagaatctttttatatgtgtgtgtccaaacattattgatttggtcttgtgacca 34998538  T
Q  174 tggaagaata 183  Q
    ||||||||||    
T  34998537 tggaagaata 34998528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 76 - 183
Target Start/End: Complemental strand, 10545100 - 10544991
Alignment:
Q  76 aataataaagaggaaattgataaa--aatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgacca 173  Q
    ||||||||||||||||||||||||  ||  ||||||||||||||  |  | ||||||||||||||||| | |||| | |||||||| |||||||||| |     
T  10545100 aataataaagaggaaattgataaataaaaaatgattgaatattttaaaaataatctttttatgtgtgtctccaaatactattgattcggtcttgtgatcg 10545001  T
Q  174 tggaagaata 183  Q
    ||||||||||    
T  10545000 tggaagaata 10544991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 104 - 183
Target Start/End: Original strand, 39187986 - 39188065
Alignment:
Q  104 atgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatggaagaata 183  Q
    ||||||||||||||  ||||  ||||||||||| |||| | |||| | ||||||||||||||| ||||||||||||||||    
T  39187986 atgattgaatattttaaggaccatctttttatgcgtgtgtccaaatactattgatttggtcttctgaccatggaagaata 39188065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 76 - 183
Target Start/End: Original strand, 45627414 - 45627524
Alignment:
Q  76 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatcttttt-atgtgtgtat-tcaaa-cattattgatttggtcttgtgacc 172  Q
    ||||||| | ||||||||||||||||  |||||| |||||||  |||| ||| ||||| |||||||| | ||||| || ||||||||||||| |||||||    
T  45627414 aataatataaaggaaattgataaaaaaaatgattaaatattttaaggacaattttttttatgtgtgtgtgtcaaaacactattgatttggtcctgtgacc 45627513  T
Q  173 atggaagaata 183  Q
    |||||||||||    
T  45627514 atggaagaata 45627524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 126 - 178
Target Start/End: Complemental strand, 32676852 - 32676800
Alignment:
Q  126 atctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatggaa 178  Q
    |||||||||  ||||||| |||||| |||||||||||||||||||||||||||    
T  32676852 atctttttacatgtgtatccaaacactattgatttggtcttgtgaccatggaa 32676800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 193
Target Start/End: Original strand, 15878797 - 15878853
Alignment:
Q  137 tgtgtattcaaacattattgatttggtcttgtgaccatggaagaatatctccttatt 193  Q
    ||||||| |||||  |||||||||||||||||||| || |||||||||||| |||||    
T  15878797 tgtgtatccaaacgctattgatttggtcttgtgacaatagaagaatatctctttatt 15878853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 135
Target Start/End: Original strand, 40076693 - 40076753
Alignment:
Q  76 aataataaagaggaaattgat-aaaaatgatgattgaatatttagaggagaatctttttat 135  Q
    |||||||| |||||||||||| ||||| |||||||||||||||  |  |||||||||||||    
T  40076693 aataataaggaggaaattgataaaaaaagatgattgaatatttttaaaagaatctttttat 40076753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 3e-35; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 76 - 187
Target Start/End: Complemental strand, 42056787 - 42056676
Alignment:
Q  76 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 175  Q
    |||||||| ||| ||||||||||||| |||||||||||||||  | |||||||||||||||| ||| | |||||||||||||||||||||||||||||||    
T  42056787 aataataaggagaaaattgataaaaaagatgattgaatattttaaagagaatctttttatgtttgtgtccaaacattattgatttggtcttgtgaccatg 42056688  T
Q  176 gaagaatatctc 187  Q
    ||||||||||||    
T  42056687 gaagaatatctc 42056676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 76 - 195
Target Start/End: Complemental strand, 30208307 - 30208187
Alignment:
Q  76 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgt--gtattcaaacattattgatttggtcttgtgacca 173  Q
    |||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |  || | |||||||||||||||||||||| ||||||    
T  30208307 aataataaggaggaaattgataaaaaagatgattgaatattt-gaggagaatctttttatgtatatgtgtccaaacattattgatttggtcttatgacca 30208209  T
Q  174 tggaagaatatctccttattct 195  Q
    |||||||||| |||| ||||||    
T  30208208 tggaagaatacctccatattct 30208187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 88 - 187
Target Start/End: Original strand, 39402038 - 39402140
Alignment:
Q  88 gaaattgataaaaat-gatgattgaatatttagaggagaatctttttatgtgtgtat--tcaaacattattgatttggtcttgtgaccatggaagaatat 184  Q
    ||||||||||||||  ||||||||||||||| ||||||||||||||||||| |||||  ||||| |||||||||||||||||||||||||||||||||||    
T  39402038 gaaattgataaaaaaagatgattgaatattttgaggagaatctttttatgtatgtatgttcaaatattattgatttggtcttgtgaccatggaagaatat 39402137  T
Q  185 ctc 187  Q
    |||    
T  39402138 ctc 39402140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 76 - 188
Target Start/End: Complemental strand, 5594891 - 5594779
Alignment:
Q  76 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 175  Q
    |||||||| ||||||| ||||||||| ||||||||||||||| ||| ||||||||| ||||||||| | |||| ||||||||||| ||||||||||||      
T  5594891 aataataaggaggaaagtgataaaaaagatgattgaatattttgagaagaatctttatatgtgtgtgtccaaatattattgatttagtcttgtgaccaga 5594792  T
Q  176 gaagaatatctcc 188  Q
    |||||||||||||    
T  5594791 gaagaatatctcc 5594779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 76 - 182
Target Start/End: Original strand, 1162117 - 1162222
Alignment:
Q  76 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 175  Q
    ||||||||||||||||||||||| || ||  ||||||||||| |||||||||| |||||||||||| |||||| |||| |||||||||||||||| ||||    
T  1162117 aataataaagaggaaattgataagaaagac-attgaatattttgaggagaatccttttatgtgtgtgttcaaatattactgatttggtcttgtgatcatg 1162215  T
Q  176 gaagaat 182  Q
    || ||||    
T  1162216 gacgaat 1162222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 76 - 183
Target Start/End: Original strand, 40719895 - 40720005
Alignment:
Q  76 aataataaagaggaaattgataaaaat-gatgattgaatatttagaggagaatcttttta--tgtgtgtattcaaacattattgatttggtcttgtgacc 172  Q
    |||||||| |||||||||||||||||  ||||||||||||||| ||||||||||||||||  ||||||| | ||||||||||| ||||  |||| |||||    
T  40719895 aataataaggaggaaattgataaaaaaagatgattgaatattttgaggagaatctttttatgtgtgtgtgtccaaacattattaatttaatcttttgacc 40719994  T
Q  173 atggaagaata 183  Q
    |||||||||||    
T  40719995 atggaagaata 40720005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 76 - 188
Target Start/End: Complemental strand, 35179268 - 35179155
Alignment:
Q  76 aataataaagaggaaattgataaaaatga-tgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccat 174  Q
    ||||||||  ||||||||||||||||  | | ||||||||||| ||| ||||||||||||| ||||| | |||||||||||||||||||||| |||||||    
T  35179268 aataataagaaggaaattgataaaaaaaaattattgaatattttgagaagaatctttttatatgtgtgtccaaacattattgatttggtcttatgaccat 35179169  T
Q  175 ggaagaatatctcc 188  Q
    | ||||||| ||||    
T  35179168 gaaagaatacctcc 35179155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 76 - 186
Target Start/End: Original strand, 31333162 - 31333273
Alignment:
Q  76 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatcttttta--tgtgtgtattcaaacattattgatttggtcttgtgacca 173  Q
    |||||||| ||| ||| ||||||||| |||||||||||||||  || | ||||||||||  ||||||||  |||||||| |||||||||||||||||| |    
T  31333162 aataataaggagaaaactgataaaaaagatgattgaatattttaagtaaaatctttttatgtgtgtgtaaccaaacatt-ttgatttggtcttgtgacta 31333260  T
Q  174 tggaagaatatct 186  Q
    |||||||||||||    
T  31333261 tggaagaatatct 31333273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 76 - 165
Target Start/End: Complemental strand, 42921474 - 42921385
Alignment:
Q  76 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtct 165  Q
    |||||||| || |||||||||||||| ||||||||| ||||| ||| ||||||||||||| | ||| ||||||||||||| |||||||||    
T  42921474 aataataaggatgaaattgataaaaaagatgattgattattttgagaagaatctttttatatttgtgttcaaacattattaatttggtct 42921385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 139
Target Start/End: Original strand, 30362018 - 30362082
Alignment:
Q  76 aataataaagaggaaattgataaaaa-tgatgattgaatatttagaggagaatctttttatgtgt 139  Q
    |||||||| || |||||||||||||| | || ||||||||||| ||||||||| |||||||||||    
T  30362018 aataataaggacgaaattgataaaaaataataattgaatattttgaggagaatttttttatgtgt 30362082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 183
Target Start/End: Complemental strand, 36132776 - 36132676
Alignment:
Q  83 aagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatggaagaat 182  Q
    ||||||||||| |||||||  |||||| |||||||  |  |  |||||||||||||||||| |||| | |||| |||| |||||||||| || |||||||    
T  36132776 aagaggaaattaataaaaaaaatgattaaatattttaaaaaccatctttttatgtgtgtatccaaatactattaatttagtcttgtgactatagaagaat 36132677  T
Q  183 a 183  Q
    |    
T  36132676 a 36132676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 3e-35; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 76 - 183
Target Start/End: Complemental strand, 33758901 - 33758794
Alignment:
Q  76 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 175  Q
    ||||||||| |||||||||||||||| |||||||||||| || ||||||||||||||||||||||| | |||||| |||||||||| |||||||||||||    
T  33758901 aataataaaaaggaaattgataaaaaagatgattgaatagtttgaggagaatctttttatgtgtgtgtccaaacagtattgatttgatcttgtgaccatg 33758802  T
Q  176 gaagaata 183  Q
    ||||||||    
T  33758801 gaagaata 33758794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 82 - 164
Target Start/End: Original strand, 23151436 - 23151518
Alignment:
Q  82 aaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtc 164  Q
    ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||    
T  23151436 aaagaagaaattgataaaaatgatgattgaatattttgaggagaatctttttatgtgtgtgtccaaacattattgatttggtc 23151518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 76 - 188
Target Start/End: Original strand, 2976446 - 2976556
Alignment:
Q  76 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 175  Q
    |||| |||||| ||||||||||||||  ||||||||||||||  ||||  |||||||||||||||  | |||||| ||||||||||||||| ||||||||    
T  2976446 aatattaaagaagaaattgataaaaaaaatgattgaatattttaaggaccatctttttatgtgtg--tccaaacactattgatttggtcttatgaccatg 2976543  T
Q  176 gaagaatatctcc 188  Q
    |||||||| ||||    
T  2976544 gaagaatacctcc 2976556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 76 - 174
Target Start/End: Complemental strand, 34849550 - 34849451
Alignment:
Q  76 aataataaagaggaaattgataaaaat-gatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccat 174  Q
    |||||||| ||| |||||||||||||  ||||||||||||||| ||||||||||||||||| ||||| |  ||||||||||||||| ||||| |||||||    
T  34849550 aataataaggagaaaattgataaaaaaagatgattgaatattttgaggagaatctttttatatgtgtgtcgaaacattattgatttcgtcttatgaccat 34849451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 76 - 173
Target Start/End: Complemental strand, 30319915 - 30319817
Alignment:
Q  76 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtg--tattcaaacattattgatttggtcttgtgacca 173  Q
    ||||| || ||||||||||||||||| |||||||||||||||  | |||||| |||||||||| |  ||| |||||||||||||||||||||||||||||    
T  30319915 aataagaaggaggaaattgataaaaaagatgattgaatattttaaagagaat-tttttatgtgcgcgtatccaaacattattgatttggtcttgtgacca 30319817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 76 - 183
Target Start/End: Original strand, 20524604 - 20524711
Alignment:
Q  76 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 175  Q
    ||||||||||||||||||||||||||  ||||||||||||||  |  |  ||||||| |||||||| | |||||| ||||||||| || |||||| ||||    
T  20524604 aataataaagaggaaattgataaaaaaaatgattgaatattttaaacatcatcttttgatgtgtgtgtccaaacagtattgatttagttttgtgatcatg 20524703  T
Q  176 gaagaata 183  Q
    ||||||||    
T  20524704 gaagaata 20524711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 76 - 183
Target Start/End: Complemental strand, 10719854 - 10719746
Alignment:
Q  76 aataataaagaggaaattgataaaaatga-tgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccat 174  Q
    |||| ||||||| |||||||||||||  | |||||||||||||  ||||  || ||||||||||||| | |||||| |||| |||||||||| |||||||    
T  10719854 aatagtaaagagaaaattgataaaaaaaaatgattgaatattttaaggaccatttttttatgtgtgtgtccaaacactattaatttggtcttatgaccat 10719755  T
Q  175 ggaagaata 183  Q
    |||||||||    
T  10719754 ggaagaata 10719746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 76 - 163
Target Start/End: Original strand, 37872201 - 37872291
Alignment:
Q  76 aataataaagaggaaattgataaaaat-gatgattgaatatttagaggagaatcttttta--tgtgtgtattcaaacattattgatttggt 163  Q
    |||||||| |||||||||||||||||  ||||||||||||||| || |||||||||||||  ||||||| | |||| ||||||||||||||    
T  37872201 aataataaggaggaaattgataaaaaaagatgattgaatattttgatgagaatctttttatgtgtgtgtgtccaaatattattgatttggt 37872291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 146 - 186
Target Start/End: Original strand, 37872302 - 37872342
Alignment:
Q  146 aaacattattgatttggtcttgtgaccatggaagaatatct 186  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  37872302 aaacattattgatttggtcttgtgaccatggaagaatatct 37872342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 78 - 190
Target Start/End: Complemental strand, 8026577 - 8026460
Alignment:
Q  78 taataaagaggaaattgata---aaaatgatgattgaatatttagaggagaatctttttatgtgtgta--ttcaaacattattgatttggtcttgtgacc 172  Q
    ||||||||||||||||||||   ||||  ||||||||||||||  | ||  |||||||||||||| |   | |||||| ||||||||||||||||||||     
T  8026577 taataaagaggaaattgatataaaaaaaaatgattgaatattttaaagaccatctttttatgtgtatgcgtccaaacagtattgatttggtcttgtgact 8026478  T
Q  173 atggaagaatatctcctt 190  Q
    || |||||||| ||||||    
T  8026477 atagaagaatacctcctt 8026460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 175
Target Start/End: Complemental strand, 3454358 - 3454259
Alignment:
Q  76 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatg 175  Q
    ||||||||| | |||||||||||||| |||||||||||||||  || ||||||||| ||| | |||    ||| |||||||||||| |||||| ||||||    
T  3454358 aataataaaaaagaaattgataaaaaagatgattgaatattttaagaagaatctttatatatttgtgactaaatattattgatttgatcttgtaaccatg 3454259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 134
Target Start/End: Complemental strand, 42285277 - 42285218
Alignment:
Q  76 aataataaagaggaaattgataaaaatga-tgattgaatatttagaggagaatcttttta 134  Q
    |||||||| |||||||||||||||||  | ||||||||||||| ||||||||||||||||    
T  42285277 aataataaggaggaaattgataaaaaaaaatgattgaatattttgaggagaatcttttta 42285218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 76 - 183
Target Start/End: Complemental strand, 3870135 - 3870024
Alignment:
Q  76 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatcttttta----tgtgtgtattcaaacattattgatttggtcttgtgac 171  Q
    |||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||    ||||||| |  ||||||||||||||||||||||||||    
T  3870135 aataataaggaggaaattgataaaaaagatgattgaatattttgaggagaatctttttatgtctgtgtgtgtcaaaacattattgatttggtcttgtgac 3870036  T
Q  172 catggaagaata 183  Q
    ||||||||||||    
T  3870035 catggaagaata 3870024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 76 - 183
Target Start/End: Complemental strand, 11028887 - 11028779
Alignment:
Q  76 aataataaagaggaaattgataaaaat-gatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccat 174  Q
    |||||||| |||||||||||||||||  |||||||||||||||  |||||||||||||||||||||| | |||||||||||||||||||||| |||| ||    
T  11028887 aataataaggaggaaattgataaaaaaagatgattgaatattttaaggagaatctttttatgtgtgtgtccaaacattattgatttggtcttttgacgat 11028788  T
Q  175 ggaagaata 183  Q
    |||||||||    
T  11028787 ggaagaata 11028779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 90 - 183
Target Start/End: Complemental strand, 36400952 - 36400857
Alignment:
Q  90 aattgataaaaatgatgattgaatatttagaggagaatctttttatgt--gtgtattcaaacattattgatttggtcttgtgaccatggaagaata 183  Q
    |||||||||||| ||||||||||||||| |||||||||||||||||||  |||| ||||||||||||||||||||||||| |||||||||||||||    
T  36400952 aattgataaaaaagatgattgaatattttgaggagaatctttttatgtgtgtgtgttcaaacattattgatttggtcttgagaccatggaagaata 36400857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 76 - 189
Target Start/End: Original strand, 28734070 - 28734183
Alignment:
Q  76 aataataaagaggaaattgataaaaat-gatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccat 174  Q
    ||||||||||| ||||||||||||||  ||||| ||| ||||| ||||||||| ||||||||||||| | |||||||||||||||||||||||||||| |    
T  28734070 aataataaagaagaaattgataaaaaaagatgagtgagtattttgaggagaat-tttttatgtgtgtgtccaaacattattgatttggtcttgtgaccgt 28734168  T
Q  175 ggaagaatatctcct 189  Q
    ||||||||| |||||    
T  28734169 ggaagaatacctcct 28734183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 76 - 183
Target Start/End: Complemental strand, 37721557 - 37721449
Alignment:
Q  76 aataataaagaggaaattgataaaaatga-tgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccat 174  Q
    |||||||| |||||||||||||||||  | ||||||||||||| || ||||||||||||||| | || | |||| |||||||||||||||||||||||||    
T  37721557 aataataaggaggaaattgataaaaaaaaatgattgaatattttgaagagaatctttttatgcgcgtgtccaaatattattgatttggtcttgtgaccat 37721458  T
Q  175 ggaagaata 183  Q
    |||||||||    
T  37721457 ggaagaata 37721449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 76 - 183
Target Start/End: Complemental strand, 38879625 - 38879517
Alignment:
Q  76 aataataaagaggaaattgataaaaat-gatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccat 174  Q
    |||||| | ||| |||||||||||||  ||||||| ||||||| ||||||||||||||||||||||| | ||||||||||| ||||||||||||||| ||    
T  38879625 aataatgaggagaaaattgataaaaaaagatgatttaatattttgaggagaatctttttatgtgtgtgtccaaacattattaatttggtcttgtgactat 38879526  T
Q  175 ggaagaata 183  Q
    |||||||||    
T  38879525 ggaagaata 38879517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 76 - 183
Target Start/End: Complemental strand, 3647526 - 3647418
Alignment:
Q  76 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgt--gtattcaaacattattgatttggtcttgtgacca 173  Q
    ||||| || ||| ||||||||||||| |||||||||||||||  | |||||| |||||||||||  || |||||||||||||||||||||||||||||||    
T  3647526 aataagaaggagaaaattgataaaaaagatgattgaatattttaaagagaat-tttttatgtgttcgtgttcaaacattattgatttggtcttgtgacca 3647428  T
Q  174 tggaagaata 183  Q
     |||||||||    
T  3647427 aggaagaata 3647418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 76 - 182
Target Start/End: Original strand, 30706149 - 30706258
Alignment:
Q  76 aataataaagaggaaattgataaaaatga-----tgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtga 170  Q
    |||| |||||||||||||||||||||  |     |||||||||||||  ||||  ||||||||||||||||   |||||| |||||||||||||||||||    
T  30706149 aatagtaaagaggaaattgataaaaaaaaaaaaatgattgaatattttaaggaccatctttttatgtgtgtc--caaacactattgatttggtcttgtga 30706246  T
Q  171 ccatggaagaat 182  Q
    ||||| ||||||    
T  30706247 ccatgtaagaat 30706258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 76 - 183
Target Start/End: Original strand, 6512079 - 6512191
Alignment:
Q  76 aataataaagaggaaattgataaaaatga---tgattgaatattt-agaggagaatctttttatgtgtgtatt--caaacattattgatttggtcttgtg 169  Q
    ||||||||||||||||||||||||||  |   ||||||||||||| ||||   | ||||||||||||||| |   |||||| ||||||||||||||||||    
T  6512079 aataataaagaggaaattgataaaaaaaaaaatgattgaatattttagagttca-tctttttatgtgtgtgtgtccaaacactattgatttggtcttgtg 6512177  T
Q  170 accatggaagaata 183  Q
    ||||||||| ||||    
T  6512178 accatggaataata 6512191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 76 - 137
Target Start/End: Original strand, 3949317 - 3949378
Alignment:
Q  76 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgt 137  Q
    ||||||||| | ||||||||||||||  |||||||||||||| ||||||||  |||||||||    
T  3949317 aataataaaaaagaaattgataaaaaaaatgattgaatattttgaggagaaattttttatgt 3949378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0095 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 88 - 187
Target Start/End: Complemental strand, 35464 - 35362
Alignment:
Q  88 gaaattgataaaaat-gatgattgaatatttagaggagaatctttttatgtgtgtat--tcaaacattattgatttggtcttgtgaccatggaagaatat 184  Q
    ||||||||||||||  ||||||||||||||| ||||||||||||||||||| |||||  ||||| |||||||||||||||||||||||||||||||||||    
T  35464 gaaattgataaaaaaagatgattgaatattttgaggagaatctttttatgtatgtatgttcaaatattattgatttggtcttgtgaccatggaagaatat 35365  T
Q  185 ctc 187  Q
    |||    
T  35364 ctc 35362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 2e-26; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 76 - 183
Target Start/End: Original strand, 2141240 - 2141348
Alignment:
Q  76 aataataaagaggaaattgataaaaat-gatgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccat 174  Q
    |||||||| |||||||||||||||||| ||||||||||||||| ||| | |||||||||||||| || | ||||| |||||||| || ||||||||||||    
T  2141240 aataataatgaggaaattgataaaaatagatgattgaatattttgagaaaaatctttttatgtgggtgtccaaacgttattgatatgatcttgtgaccat 2141339  T
Q  175 ggaagaata 183  Q
    |||||||||    
T  2141340 ggaagaata 2141348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 76 - 188
Target Start/End: Complemental strand, 7080262 - 7080148
Alignment:
Q  76 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgt--gtgtattcaaacattattgatttggtcttgtgacca 173  Q
    |||| |||||| |||||||||||||| ||| ||||||||||| || ||||||||||||||||  |||| | |||||||||||||||||||| ||||||||    
T  7080262 aatattaaagacgaaattgataaaaaagattattgaatattttgaagagaatctttttatgtgtgtgtgtccaaacattattgatttggtcatgtgacca 7080163  T
Q  174 tggaagaatatctcc 188  Q
    | |||||||| ||||    
T  7080162 tagaagaatacctcc 7080148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 89 - 183
Target Start/End: Original strand, 25336928 - 25337023
Alignment:
Q  89 aaattgataaaaatgatgattgaatatttagaggagaatctttttatgtgtg--tattcaaacattattgatttggtcttgtgaccatggaagaata 183  Q
    ||||||||||||| |||||||||||||||  | |||||| ||||||||||||  | | ||||||||||||||||| ||||||||||| |||||||||    
T  25336928 aaattgataaaaaagatgattgaatattttaaagagaat-tttttatgtgtgcgtgtccaaacattattgatttgatcttgtgaccaaggaagaata 25337023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0288 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 104 - 183
Target Start/End: Original strand, 18084 - 18163
Alignment:
Q  104 atgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatggaagaata 183  Q
    |||||||||||||| ||||||||||||||| | ||||| ||||||||||||||||| | |||||| ||||||||||||||    
T  18084 atgattgaatattttgaggagaatctttttctatgtgtgttcaaacattattgattggatcttgtaaccatggaagaata 18163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 104 - 191
Target Start/End: Complemental strand, 25767 - 25680
Alignment:
Q  104 atgattgaatatttagaggagaatctttttatgtgtgtattcaaacattattgatttggtcttgtgaccatggaagaatatctcctta 191  Q
    |||||||||||||| || || |||||||||| |||||| | ||||||||||||||||||||| |||| |||||||||||| |||||||    
T  25767 atgattgaatattttgatgaaaatctttttacgtgtgtgtccaaacattattgatttggtctcgtgatcatggaagaatacctcctta 25680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1339 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: scaffold1339
Description:

Target: scaffold1339; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 76 - 183
Target Start/End: Original strand, 57 - 165
Alignment:
Q  76 aataataaagaggaaattgataaaaatgatgattgaatatttagaggagaatctttttatgt--gtgtattcaaacattattgatttggtcttgtgacca 173  Q
    ||||||||||| ||||||||||||||  ||||||||||||||  | ||  ||||||||||||  |||| | |||||| ||||||||||||||||||| ||    
T  57 aataataaagatgaaattgataaaaaa-atgattgaatatttttaagactatctttttatgtatgtgtgtccaaacactattgatttggtcttgtgatca 155  T
Q  174 tggaagaata 183  Q
    ||||||||||    
T  156 tggaagaata 165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University