View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10104A_low_37 (Length: 418)

Name: NF10104A_low_37
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10104A_low_37
NF10104A_low_37
[»] chr6 (3 HSPs)
chr6 (19-412)||(663602-664000)
chr6 (23-251)||(908100-908328)
chr6 (205-249)||(10157995-10158039)
[»] chr7 (4 HSPs)
chr7 (293-356)||(44172881-44172944)
chr7 (286-360)||(36314611-36314685)
chr7 (310-376)||(38134414-38134480)
chr7 (202-250)||(36314628-36314676)
[»] chr2 (1 HSPs)
chr2 (199-250)||(44605137-44605188)
[»] chr5 (2 HSPs)
chr5 (299-372)||(16315862-16315935)
chr5 (299-347)||(19625928-19625976)
[»] chr3 (1 HSPs)
chr3 (293-361)||(8039206-8039274)
[»] chr4 (2 HSPs)
chr4 (299-361)||(18513238-18513300)
chr4 (320-369)||(5654609-5654658)
[»] chr8 (1 HSPs)
chr8 (310-375)||(6501481-6501546)
[»] chr1 (2 HSPs)
chr1 (293-370)||(43328458-43328535)
chr1 (199-247)||(40158408-40158456)


Alignment Details
Target: chr6 (Bit Score: 367; Significance: 0; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 19 - 412
Target Start/End: Original strand, 663602 - 664000
Alignment:
Q  19 gacatcaaaaactgcattattatgcgaactccattcacaaatcctcgcttcctctgatatcaaaagaggcaaaatttcacataagcaaatcataaaccat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  663602 gacatcaaaaactgcattattatgcgaactccattcacaaatcctcgcttcctctgatatcaaaagaggcaaaatttcacataagcaaatcataaaccat 663701  T
Q  119 aaaaactgttcgtatataaaatctttgtagcaccaacacttcttatcaaaggtgtgccaagtgtacaatgcatgtaagtatctaacaccgacacatgtaa 218  Q
    ||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  663702 aaaaattgttcatatatataatctttgtagcaccaacacttcttatcaaaggtgtgccaagtgtacaatgcatgtaagtatctaacaccgacacatgtaa 663801  T
Q  219 tttcattgaaatatgtctttttctcaaattataaatggtgttagaatcgacacttctaatcaaaggtgtgtctaacact-----aacacaacactaacac 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||    
T  663802 tttcattgaaatatgtctttttctcaaattataaatggtgttagaatcgacacttctaatcaaaggtgtgtctaacactaacacaacacaacactaacac 663901  T
Q  314 atgtggttacattgaaatatgccatgttctcaaattatcatcagtgtcaacatgtcaatgtccatattgtatcaggtgttcatacttcaaatctaatta 412  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  663902 atgtggttacattgaaatatgccatgttctcaaattatcatcagtgtcaacatgtcaatgtccatattgtatcaggtgttcatacttcaaatctaatta 664000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 23 - 251
Target Start/End: Complemental strand, 908328 - 908100
Alignment:
Q  23 tcaaaaactgcattattatgcgaactccattcacaaatcctcgcttcctctgatatcaaaagaggcaaaatttcacataagcaaatcataaaccataaaa 122  Q
    ||||||||||||||||||||| |||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||||    
T  908328 tcaaaaactgcattattatgcaaactccattcacaaattctcgctttctctggtatcaaaagaggcaaaatttcacataagtaaatcataaaccataaaa 908229  T
Q  123 actgttcgtatataaaatctttgtagcaccaacacttcttatcaaaggtgtgccaagtgtacaatgcatgtaagtatctaacaccgacacatgtaatttc 222  Q
      ||||  |||||| ||||||||||||||||||||| ||||||||||||||||||||||| | || ||||||||| ||||||||||||| |||||| | |    
T  908228 tttgttgatatatataatctttgtagcaccaacactacttatcaaaggtgtgccaagtgtccgatacatgtaagtgtctaacaccgacaaatgtaagtac 908129  T
Q  223 attgaaatatgtctttttctcaaattata 251  Q
    ||||||||||| || ||||||||||||||    
T  908128 attgaaatatgactatttctcaaattata 908100  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 205 - 249
Target Start/End: Complemental strand, 10158039 - 10157995
Alignment:
Q  205 accgacacatgtaatttcattgaaatatgtctttttctcaaatta 249  Q
    |||||||||||| ||| ||||||| |||||| |||||||||||||    
T  10158039 accgacacatgtgattacattgaattatgtcattttctcaaatta 10157995  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 293 - 356
Target Start/End: Original strand, 44172881 - 44172944
Alignment:
Q  293 acactaacacaacactaacacatgtggttacattgaaatatgccatgttctcaaattatcatca 356  Q
    |||| |||||||||| |||||||||| |||||||||| |||| ||| |||||||||||| ||||    
T  44172881 acaccaacacaacacaaacacatgtgattacattgaattatgtcattttctcaaattattatca 44172944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 286 - 360
Target Start/End: Original strand, 36314611 - 36314685
Alignment:
Q  286 gtgtctaacactaacacaacactaacacatgtggttacattgaaatatgccatgttctcaaattatcatcagtgt 360  Q
    ||||| ||||| || ||||||| ||||||| || ||||||||||||||| ||| |||||||||||| || |||||    
T  36314611 gtgtccaacaccaagacaacaccaacacatatgattacattgaaatatgtcattttctcaaattattatgagtgt 36314685  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 310 - 376
Target Start/End: Original strand, 38134414 - 38134480
Alignment:
Q  310 acacatgtggttacattgaaatatgccatgttctcaaattatcatcagtgtcaacatgtcaatgtcc 376  Q
    |||||| || |||||||||| |||| ||| |||||||||||| ||| ||||||||||||| ||||||    
T  38134414 acacatatgattacattgaattatgtcattttctcaaattattatcggtgtcaacatgtccatgtcc 38134480  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 202 - 250
Target Start/End: Original strand, 36314628 - 36314676
Alignment:
Q  202 aacaccgacacatgtaatttcattgaaatatgtctttttctcaaattat 250  Q
    |||||| |||||| | ||| |||||||||||||| ||||||||||||||    
T  36314628 aacaccaacacatatgattacattgaaatatgtcattttctcaaattat 36314676  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 199 - 250
Target Start/End: Original strand, 44605137 - 44605188
Alignment:
Q  199 tctaacaccgacacatgtaatttcattgaaatatgtctttttctcaaattat 250  Q
    |||||||||||||||||||||| ||||||| |||||  ||||||||||||||    
T  44605137 tctaacaccgacacatgtaattacattgaattatgttattttctcaaattat 44605188  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 299 - 372
Target Start/End: Complemental strand, 16315935 - 16315862
Alignment:
Q  299 acacaacactaacacatgtggttacattgaaatatgccatgttctcaaattatcatcagtgtcaacatgtcaat 372  Q
    |||||||||  | ||||||||||||||| || |||  ||| | |||||||||| ||||||||||||||||||||    
T  16315935 acacaacacagatacatgtggttacattcaattatatcatttcctcaaattattatcagtgtcaacatgtcaat 16315862  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 299 - 347
Target Start/End: Original strand, 19625928 - 19625976
Alignment:
Q  299 acacaacactaacacatgtggttacattgaaatatgccatgttctcaaa 347  Q
    |||||||||| ||||||||||||||||| || ||| |||| ||||||||    
T  19625928 acacaacactgacacatgtggttacattcaattattccattttctcaaa 19625976  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 293 - 361
Target Start/End: Complemental strand, 8039274 - 8039206
Alignment:
Q  293 acactaacacaacactaacacatgtggttacattgaaatatgccatgttctcaaattatcatcagtgtc 361  Q
    ||||| |||||||||  |||| | || ||||||||||  ||||||| ||||||||||||||||||||||    
T  8039274 acactgacacaacaccgacacctatgattacattgaatcatgccattttctcaaattatcatcagtgtc 8039206  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 299 - 361
Target Start/End: Original strand, 18513238 - 18513300
Alignment:
Q  299 acacaacactaacacatgtggttacattgaaatatgccatgttctcaaattatcatcagtgtc 361  Q
    |||||||||| |||||| || |||||||||| |||| ||| |||||||||||| ||| |||||    
T  18513238 acacaacactgacacatatgattacattgaattatgtcattttctcaaattattatcggtgtc 18513300  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 320 - 369
Target Start/End: Original strand, 5654609 - 5654658
Alignment:
Q  320 ttacattgaaatatgccatgttctcaaattatcatcagtgtcaacatgtc 369  Q
    |||||||||| |||| ||| |||||||||||| ||||||||| |||||||    
T  5654609 ttacattgaattatgtcattttctcaaattattatcagtgtcgacatgtc 5654658  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 375
Target Start/End: Complemental strand, 6501546 - 6501481
Alignment:
Q  310 acacatgtggttacattgaaatatgccatgttctcaaattatcatcagtgtcaacatgtcaatgtc 375  Q
    ||||||||||||||||| || |||  |||  ||||||||||| | |||||||||| ||||||||||    
T  6501546 acacatgtggttacatttaattatttcattctctcaaattattaccagtgtcaacgtgtcaatgtc 6501481  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 370
Target Start/End: Complemental strand, 43328535 - 43328458
Alignment:
Q  293 acactaacacaacactaacacatgtggttacattgaaatatgccatgttctcaaattatcatcagtgtcaacatgtca 370  Q
    |||| ||||| ||| | ||||||||||||||||| || |||  ||| |||||||||||| || ||||||||| |||||    
T  43328535 acaccaacacgacaatgacacatgtggttacattaaattatttcattttctcaaattattataagtgtcaacgtgtca 43328458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 199 - 247
Target Start/End: Original strand, 40158408 - 40158456
Alignment:
Q  199 tctaacaccgacacatgtaatttcattgaaatatgtctttttctcaaat 247  Q
    |||||||||||||||||| |||||||| |  |||||| |||||||||||    
T  40158408 tctaacaccgacacatgtgatttcattcatttatgtcattttctcaaat 40158456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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