View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10104A_low_370 (Length: 227)
Name: NF10104A_low_370
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104A_low_370 |
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Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 7 - 210
Target Start/End: Complemental strand, 35181406 - 35181203
Alignment:
| Q |
7 |
gattctacatgttagcatcctttccttgatcatatttaatcttcaaactaaagtttgcgaaaggaaggattaaagaaatacttctaaataaattgttgca |
106 |
Q |
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| T |
35181406 |
gattctacatgttagcatcctttccttgatcatatttaatcttcaaactaaagtttgcgaaaggaaggattaaagaaatacttctaaataaattgttgca |
35181307 |
T |
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| Q |
107 |
aaacgtagtcaaggaagtagtctgcaccgagttgcaatatttccttttgcaccgaaaagacaacattctgttgtcgtgcgggctacctgaactcttgata |
206 |
Q |
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| T |
35181306 |
aaacatagtcaaggaagtagtctgcaccgagttgcaatatttccttttgcaccgaaaagacaacattctgttgtcgtgcgggctacctgaactcttgcta |
35181207 |
T |
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| Q |
207 |
ttgt |
210 |
Q |
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|||| |
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| T |
35181206 |
ttgt |
35181203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 60
Target Start/End: Complemental strand, 35173351 - 35173305
Alignment:
| Q |
14 |
catgttagcatcctttccttgatcatatttaatcttcaaactaaagt |
60 |
Q |
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| T |
35173351 |
catgttagcatccattccatgatcatatttaatcttcaaactaaagt |
35173305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 116 - 164
Target Start/End: Original strand, 35154016 - 35154064
Alignment:
| Q |
116 |
caaggaagtagtctgcaccgagttgcaatatttccttttgcaccgaaaa |
164 |
Q |
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| T |
35154016 |
caaggaagtagtctgccctgagttgcaatatttccttttgtaccgaaaa |
35154064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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