View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10104A_low_374 (Length: 226)
Name: NF10104A_low_374
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104A_low_374 |
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Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 12843681 - 12843893
Alignment:
| Q |
1 |
gaaatcaagccaattcctcacaattacattcatcgattcacgtgaaagattttcaccattgaacctgtaatgcctcagatcctgaggatctttccacatt |
100 |
Q |
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| T |
12843681 |
gaaatcaagccaattcctcacaattacatttatcgattcacgtgaaagattttcaccattgaacctgtaatgcctcagatcctgaggatctttccacatt |
12843780 |
T |
|
| Q |
101 |
tgcaagcgatgatcaaatctctccagccttctacgatcagcagcgttccagaatccaacgaaggtgttcttaggatgacggagaaaattgcagagactga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |
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| T |
12843781 |
tgcaagcgatgatcaaatctctccagccttctacgatcagcagcgttccagaatccaacgaaggtgttcttaggatgacggagaaagttgcagagactaa |
12843880 |
T |
|
| Q |
201 |
ccggaatcatatc |
213 |
Q |
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||||||||||||| |
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| T |
12843881 |
ccggaatcatatc |
12843893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 12861800 - 12861581
Alignment:
| Q |
1 |
gaaatcaagccaattcctcacaattacattcatcgattcacgtgaaagattttcaccattgaacctgtaatgcctcagatcctgaggatctttccacatt |
100 |
Q |
| |
|
|||| |||| || |||||||||||| ||| ||||||| |||||||||| ||||||||||||| ||||| ||||| ||||||||||| |||||||||| |
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| T |
12861800 |
gaaaccaagacatttcctcacaatttcatccatcgataaacgtgaaagagcttcaccattgaactcgtaattcctcaaatcctgaggatttttccacatt |
12861701 |
T |
|
| Q |
101 |
tgcaagcgatgatcaaatctctccagccttctacgatcagcagcgttccagaatccaacgaaggtgttcttaggatgacggagaaaattgcagagactga |
200 |
Q |
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||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12861700 |
tgcaagcgatgatcaaatctctccagcttcctacgatctgcagcgttccagaatccaacgaaggtgttcttaggatgacggagaaaattgcagagactga |
12861601 |
T |
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| Q |
201 |
ccggaatcatatctgcgcga |
220 |
Q |
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|||||||||||||||||||| |
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| T |
12861600 |
ccggaatcatatctgcgcga |
12861581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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