View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10104A_low_376 (Length: 226)
Name: NF10104A_low_376
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104A_low_376 |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 20816616 - 20816837
Alignment:
| Q |
1 |
gctggaagaacacaaccagggaaatgctttagactttatacggaaagaagtttcaataatgatcttcagccgcagacctatcctgaaattttgagatcta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20816616 |
gctggaagaacacaaccagggaaatgctttagactttatacggaaagaagtttcaataatgatcttcagccgcagacctatcctgaaattttgagatcta |
20816715 |
T |
|
| Q |
101 |
atctcgccaacacagttcttactttgaagaaattgggtatagacgatttagtgcattttgactttatggaccctcctgcaccagaaaccttaatgcgcgc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20816716 |
atctcgccaacacagttcttactttgaagaaattgggtatagacgatttagtacattttgactttatggaccctcctgcaccagaaaccttaatgcgcgc |
20816815 |
T |
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| Q |
201 |
tttggaagtgttgaattacttg |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
20816816 |
tttggaagtgttgaattacttg |
20816837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 38779529 - 38779308
Alignment:
| Q |
1 |
gctggaagaacacaaccagggaaatgctttagactttatacggaaagaagtttcaataatgatcttcagccgcagacctatcctgaaattttgagatcta |
100 |
Q |
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||||||||||| || || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38779529 |
gctggaagaactcagccggggaaatgctttagactttataccgaaagaagtttcaataatgatcttcagccgcagacctatcctgaaattttgagatcta |
38779430 |
T |
|
| Q |
101 |
atctcgccaacacagttcttactttgaagaaattgggtatagacgatttagtgcattttgactttatggaccctcctgcaccagaaaccttaatgcgcgc |
200 |
Q |
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|||| ||||||||||||||||| ||||||||| |||||||||| |||||||| ||||||||||| |||||||||||||| || |||||||| ||||| || |
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| T |
38779429 |
atcttgccaacacagttcttacattgaagaaactgggtatagatgatttagttcattttgacttcatggaccctcctgcccctgaaaccttgatgcgtgc |
38779330 |
T |
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| Q |
201 |
tttggaagtgttgaattacttg |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
38779329 |
tttggaagtgttgaattacttg |
38779308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 4 - 221
Target Start/End: Complemental strand, 33388485 - 33388268
Alignment:
| Q |
4 |
ggaagaacacaaccagggaaatgctttagactttatacggaaagaagtttcaataatgatcttcagccgcagacctatcctgaaattttgagatctaatc |
103 |
Q |
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|||||||| ||||| |||||||||| |||||| ||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33388485 |
ggaagaactcaaccggggaaatgctatagactctataccgaaataagtttcagtaatgatcttcagccgcagacctatcctgaaattttgagatctaatc |
33388386 |
T |
|
| Q |
104 |
tcgccaacacagttcttactttgaagaaattgggtatagacgatttagtgcattttgactttatggaccctcctgcaccagaaaccttaatgcgcgcttt |
203 |
Q |
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| || ||||| |||||||| |||||||||||||||||||| |||||||| ||||||||||| |||||||||||||| || |||||||||||||| ||||| |
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| T |
33388385 |
ttgcaaacacggttcttacattgaagaaattgggtatagatgatttagttcattttgacttcatggaccctcctgctcctgaaaccttaatgcgtgcttt |
33388286 |
T |
|
| Q |
204 |
ggaagtgttgaattactt |
221 |
Q |
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|||||||||||||||||| |
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|
| T |
33388285 |
ggaagtgttgaattactt |
33388268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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