View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10104A_low_380 (Length: 224)
Name: NF10104A_low_380
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104A_low_380 |
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Alignment Details
Target: chr8 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 13 - 220
Target Start/End: Original strand, 9579466 - 9579673
Alignment:
| Q |
13 |
tttttatgaatgaaatgattttaattgtttattctatttattt--agttaagaagaggggaaagaatgagaggataggaatattttggtatttgtggtag |
110 |
Q |
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| T |
9579466 |
tttttatgaatgaaatgattttaattgcatattctatttatttttagttaagaagatgggaaagaatgagaggaaaggaatattttggtatttgtggtag |
9579565 |
T |
|
| Q |
111 |
cataagatatttaaaaaactctcaaagccagaagaaaacatttcaatcctctttatttttcttcctcacnnnnnnnntcctctttatttttcattttctc |
210 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
9579566 |
cataagatatttaaaaaaccctcaaagccagaagaaaacatttcaatcctctttatttttcttcctcacaaaaaaa--cctctttatttttcattttctc |
9579663 |
T |
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| Q |
211 |
aactccaaac |
220 |
Q |
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|||||||||| |
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| T |
9579664 |
aactccaaac |
9579673 |
T |
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