View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10104A_low_383 (Length: 224)
Name: NF10104A_low_383
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104A_low_383 |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 3308398 - 3308180
Alignment:
| Q |
1 |
aagtggtaatgctcaatatttacccatcaaccacttgttgctctcttgagtgctcgaattcctcttcagcaaaactgatcaagtccaagaaattcttgaa |
100 |
Q |
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| T |
3308398 |
aagtggtaatgctcaatatttacccatcaaccacttgttgctctcttgagtgccgaaattactcttcagcaaaactgatcaagtccgagaaattcttgaa |
3308299 |
T |
|
| Q |
101 |
ccctgttataggcatcgacctccacttccatccaactaccctttgatccttaggtagtcctacaagttttcaagtttgattcttctccataaattctttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |
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| T |
3308298 |
ccctgttataggcatcgacctccacttccatccaactaccctttgatccttaggtagtcccacaagttttcaagtttgattcttctccatgaattctttt |
3308199 |
T |
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| Q |
201 |
cctcattcactttcttctt |
219 |
Q |
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||||||||||||||||||| |
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| T |
3308198 |
cctcattcactttcttctt |
3308180 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 189
Target Start/End: Complemental strand, 16626852 - 16626784
Alignment:
| Q |
121 |
tccacttccatccaactaccctttgatccttaggtagtcctacaagttttcaagtttgattcttctcca |
189 |
Q |
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||||||| ||||||||||||||||| | |||||||| ||||||||||||||||| ||||| |||| |
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| T |
16626852 |
tccacttgcatccaactaccctttggtgtttaggtagcttcacaagttttcaagtttggttcttttcca |
16626784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 189
Target Start/End: Original strand, 16257296 - 16257364
Alignment:
| Q |
121 |
tccacttccatccaactaccctttgatccttaggtagtcctacaagttttcaagtttgattcttctcca |
189 |
Q |
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||||||| ||||||||||||||||| | |||||||| ||||||||| |||||||| ||||| |||| |
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| T |
16257296 |
tccacttgcatccaactaccctttggtgtttaggtagctttacaagtttccaagtttggttcttttcca |
16257364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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