View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10104A_low_386 (Length: 223)
Name: NF10104A_low_386
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104A_low_386 |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 6011501 - 6011285
Alignment:
| Q |
1 |
ttgtgtatgggagatatgtgaaacaagcgttagaatgtaatataaatatttcttagtttaacaatatgtttatgcctattttaacattccagattttgga |
100 |
Q |
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| T |
6011501 |
ttgtgtatgggagatatgtgaaacaagcgttagaatgtaatataaatatttcttagtttaacattatgtttatgcctattttaacattccagattttgga |
6011402 |
T |
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| Q |
101 |
cttgctaaagcaatcattaatctccaagtctcctctcactgatatatttttggccaatgaagaatttaaaatgatgtcaacattctcaccaagacaagaa |
200 |
Q |
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| T |
6011401 |
cttgctaaagcaatcattaatctccaagtctcctctcactgatatatttttggccaatgaagaatttaaaatgatgtcaacattctcaccaagacaagaa |
6011302 |
T |
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| Q |
201 |
ccaaagtttgaaaaatg |
217 |
Q |
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||||||||||||||||| |
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| T |
6011301 |
ccaaagtttgaaaaatg |
6011285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 91 - 169
Target Start/End: Complemental strand, 6001881 - 6001803
Alignment:
| Q |
91 |
agattttggacttgctaaagcaatcattaatctccaagtctcctctcactgatatatttttggccaatgaagaatttaa |
169 |
Q |
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||||||||||||| |||||| || |||||| ||| ||||||||||||| | || |||| ||||| |||| ||||||||| |
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| T |
6001881 |
agattttggacttactaaagaaagcattaacctcaaagtctcctctcagtaatgtattattggcgaatggagaatttaa |
6001803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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