View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10104A_low_394 (Length: 221)
Name: NF10104A_low_394
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104A_low_394 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 22 - 201
Target Start/End: Complemental strand, 43552117 - 43551937
Alignment:
| Q |
22 |
tttattacatatttgaatttcgtaaaatttgtcatgcattttaaatttcaaccgtttgatcttaaattaacaattaaaatt-gttgaatatgattttgtt |
120 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |||||| |||||||||| |
|
|
| T |
43552117 |
tttattacatatttgaatttggtaaaatttgtcatgcattttaaatttcaaccgtgtgatctcaaattaacaattaaaattaattgaatctgattttgtt |
43552018 |
T |
|
| Q |
121 |
attgtttaatttgagctgtttaatatcatatgaatattcgagatagcctacaaactatgaatcacgtacacagatgcaaca |
201 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| ||||||| ||||||| ||||||| |||| ||||| | |||||| |
|
|
| T |
43552017 |
attgtttaatttgaggtgtttaatatcatatgaatatacgagataacctacaacctatgaagcacgaacacatacgcaaca |
43551937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University