View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10104A_low_398 (Length: 220)
Name: NF10104A_low_398
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104A_low_398 |
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Alignment Details
Target: chr3 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 21 - 206
Target Start/End: Complemental strand, 46240078 - 46239893
Alignment:
| Q |
21 |
tcaacagtgatactcaccctgtttccaggacacactcttttaagttcagcagcatatctccttatcattgagtattgacaatcagcatcaccctcaacaa |
120 |
Q |
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|||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46240078 |
tcaacattgatactcacactatttccaggacacactcttttaagttcagcagcatatctccttatcattgagtattgacaatcagcatcaccctcaacaa |
46239979 |
T |
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| Q |
121 |
ttttctgagctatctgttttgctttccacgccctacctttggtgatacccactgcatgattcgtcctcatgtcatccatgatgtcc |
206 |
Q |
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| T |
46239978 |
ttttctgagctatctgtttagctttccacgccctacctttggtgatacccactgcatgattcgtcctcatgtcatccatgatgtcc |
46239893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 57 - 198
Target Start/End: Complemental strand, 23541436 - 23541295
Alignment:
| Q |
57 |
cttttaagttcagcagcatatctccttatcattgagtattgacaatcagcatcaccctcaacaattttctgagctatctgttttgctttccacgccctac |
156 |
Q |
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||||||||||| |||||||| |||| ||||| | ||||| | |||||||||||| |||||||| ||||||| ||||||||||| ||||| ||||||| |
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| T |
23541436 |
cttttaagttctgcagcatacctccaaatcatggcatattgcctatcagcatcaccatcaacaatactctgagcaatctgttttgccttccaagccctac |
23541337 |
T |
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| Q |
157 |
ctttggtgatacccactgcatgattcgtcctcatgtcatcca |
198 |
Q |
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| T |
23541336 |
ccattgtaatacccactgcatggtttgtcctcatgtcatcca |
23541295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 21 - 206
Target Start/End: Original strand, 3437401 - 3437574
Alignment:
| Q |
21 |
tcaacagtgatactcaccctgtttccaggacacactcttttaagttcagcagcatatctccttatcattgagtattgacaatcagcatcaccctcaacaa |
120 |
Q |
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|||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3437401 |
tcaacattgatactcacactgtttccaggacacactcttttaagttcagcagcatatctccttatcattgagtattgacaatcagcatcaccctcaacaa |
3437500 |
T |
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| Q |
121 |
ttttctgagctatctgttttgctttccacgccctacctttggtgatacccactgcatgattcgtcctcatgtcatccatgatgtcc |
206 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |
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| T |
3437501 |
ttttctgagctatctgttttgctttccacgccc------------tacccactgcatgattcgtcctcatgtcatcgatgatgtcc |
3437574 |
T |
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