View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10104A_low_4 (Length: 585)
Name: NF10104A_low_4
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104A_low_4 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 412; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 123 - 585
Target Start/End: Original strand, 476144 - 476627
Alignment:
| Q |
123 |
tacactcttcactaataaactagcttcatcttttacaccactcttagtctatgttgatgatagagtgagttctcacaggaaacaatttagtggggaattt |
222 |
Q |
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| T |
476144 |
tacactcttcactaataaactagcttcatcttttacaccactcttagtctatgttgatgatagagtgagttctcacaggaaacaatttagtggggaattt |
476243 |
T |
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| Q |
223 |
gaagcaaccaaaggaaaatttcaagatgattttgagatcaaggactttggatttttaaaattcttcctaggaacagaaactgtacattcagaacaagata |
322 |
Q |
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| T |
476244 |
gaagcaaccaaaggaaaatttcaagatgattttgagatcaaggactttggatttttaaaattcttcctaggaacagaaactgtacattcagaacaagata |
476343 |
T |
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| Q |
323 |
tcactttgtgtcaaagacagtattttctatatttattaactaagacaaataacttggtcttcaagccatccagttttcccaatagatcctattcaaggat |
422 |
Q |
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| T |
476344 |
tcactttgtgtcaaagacagtattttctatatttattaactaagacaaataacttggtcttcaagccatccagttttcccaatagatcctattcaaggat |
476443 |
T |
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| Q |
423 |
tacacaatgatgatactgaagaatatattgagcctttgctggcaagttatttgacatccataaggccagatata---------------------agtca |
501 |
Q |
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| T |
476444 |
tacacaatgatgatactgaagaatatattgagcctttgttggcaagttatttgacatccataaggccagatataatattccttgtgcaacaagtcagtca |
476543 |
T |
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| Q |
502 |
atttctagattcaccaacctcagcacacttccctagtttgttcttttctcgtagctcttcactcgatatacttggatttagtga |
585 |
Q |
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| T |
476544 |
atttctagattcaccaacctcagcacacttccctagtttgttcttttctcgtagctcttcactcgatatacttggatttagtga |
476627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 7 - 129
Target Start/End: Original strand, 475997 - 476119
Alignment:
| Q |
7 |
caagaaaggtaaattataaaatttttagctgatgaatatatattacactgttgattgaaaaaactgtgttaaatttaaagaatgaaaaattgtatcaatt |
106 |
Q |
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| T |
475997 |
caagaaaggtaaattataaattttttagctgatgaatatatattacactgttgattgaaaaaactgtgttaaatttaaagaatgaaaaattgtatcaatt |
476096 |
T |
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| Q |
107 |
tatctatacaataggctacactc |
129 |
Q |
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| T |
476097 |
tctctatacaataggctacactc |
476119 |
T |
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