View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10104A_low_401 (Length: 218)
Name: NF10104A_low_401
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104A_low_401 |
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Alignment Details
Target: chr5 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 19 - 205
Target Start/End: Complemental strand, 31998088 - 31997902
Alignment:
| Q |
19 |
aaataggtcaaaagactttgattnnnnnnnttaaaatccaattcttatgcagagccagaaagataaacaaaccaactgttaccatgaaatttagcagcta |
118 |
Q |
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| T |
31998088 |
aaataggtcaaaagacttcgattaaaaaaattaaaatccaattcttatgcagagccagaaagataaacaaaccaactgtgaccaagaaatttagcagcta |
31997989 |
T |
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| Q |
119 |
atatacttccttccagaggcacatttttccctccagaaagaccacctcctattatgcaagtccacatccacgaggcattttcttgga |
205 |
Q |
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| T |
31997988 |
atatacttccttccagaggcacatttttccctccagaaagaccacctcctattatgcaagtccacgtccacgaggcattttcttgga |
31997902 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 205
Target Start/End: Complemental strand, 31996644 - 31996612
Alignment:
| Q |
173 |
tgcaagtccacatccacgaggcattttcttgga |
205 |
Q |
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| T |
31996644 |
tgcaagtccacatccacgaggcattttcttgga |
31996612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 111 - 202
Target Start/End: Complemental strand, 15843120 - 15843029
Alignment:
| Q |
111 |
agcagctaatatacttccttccagaggcacatttttccctccagaaagaccacctcctattatgcaagtccacatccacgaggcattttctt |
202 |
Q |
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| T |
15843120 |
agcaggtaatgtacttccctccagaggcacattgccccctccaacaagaccatctcctactatgcaagtccacatccacgaggtattttctt |
15843029 |
T |
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