View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10104A_low_402 (Length: 218)

Name: NF10104A_low_402
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10104A_low_402
NF10104A_low_402
[»] chr5 (5 HSPs)
chr5 (61-196)||(32268817-32268952)
chr5 (37-195)||(41900158-41900316)
chr5 (21-93)||(32268755-32268825)
chr5 (112-187)||(41886271-41886346)
chr5 (45-94)||(12846943-12846992)
[»] chr7 (4 HSPs)
chr7 (38-105)||(15091347-15091414)
chr7 (41-103)||(10168806-10168868)
chr7 (41-103)||(10176331-10176393)
chr7 (125-166)||(10616209-10616250)
[»] chr4 (18 HSPs)
chr4 (38-99)||(2460597-2460658)
chr4 (44-117)||(2367656-2367729)
chr4 (50-99)||(2547544-2547593)
chr4 (44-96)||(2381378-2381430)
chr4 (38-98)||(6007665-6007725)
chr4 (44-102)||(566629-566687)
chr4 (44-97)||(2525763-2525816)
chr4 (50-95)||(12124836-12124881)
chr4 (50-95)||(12126892-12126937)
chr4 (38-103)||(55907434-55907499)
chr4 (44-96)||(2486313-2486365)
chr4 (44-96)||(5035628-5035680)
chr4 (38-84)||(1547469-1547515)
chr4 (52-102)||(2376228-2376278)
chr4 (58-96)||(2380123-2380161)
chr4 (50-99)||(2472104-2472153)
chr4 (65-105)||(8445271-8445311)
chr4 (45-85)||(12121009-12121049)
[»] chr3 (2 HSPs)
chr3 (38-105)||(513426-513493)
chr3 (52-103)||(51763146-51763197)
[»] chr6 (5 HSPs)
chr6 (44-104)||(14821628-14821688)
chr6 (44-96)||(6395781-6395833)
chr6 (48-96)||(6427432-6427480)
chr6 (50-84)||(6437161-6437195)
chr6 (44-86)||(7993319-7993361)
[»] chr8 (2 HSPs)
chr8 (44-103)||(32152212-32152271)
chr8 (50-96)||(39516869-39516915)
[»] chr2 (2 HSPs)
chr2 (38-103)||(1036176-1036241)
chr2 (50-103)||(44575177-44575230)
[»] chr1 (3 HSPs)
chr1 (44-93)||(15837967-15838016)
chr1 (44-103)||(33161439-33161498)
chr1 (52-96)||(52085556-52085600)


Alignment Details
Target: chr5 (Bit Score: 132; Significance: 1e-68; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 61 - 196
Target Start/End: Original strand, 32268817 - 32268952
Alignment:
Q  61 gatggagagtaactgtttggagacgatggagagagatttcaagcatcgattgttgtctttcaagaatttgaagacacattcccaacactcatctggtaga 160  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  32268817 gatggagagtaactgtttggagacgatggagagagatttcaagcatcgattgttgtctttcaagaatttgaagacacattcccaacactcatctggtaaa 32268916  T
Q  161 tatgaaccagaaatcattgattttcttcttcttttt 196  Q
    ||||||||||||||||||||||||||||||||||||    
T  32268917 tatgaaccagaaatcattgattttcttcttcttttt 32268952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 37 - 195
Target Start/End: Complemental strand, 41900316 - 41900158
Alignment:
Q  37 aagagataatcgaagacggttggtgatggagagtaactgtttggagacgatggagagagatttcaagcatcgattgttgtctttcaagaatttgaagaca 136  Q
    |||||| |||||||||  ||||||||||||||| ||||||||||||||||  ||||||||||||||| |  |||| | |||||| | |||||||||||||    
T  41900316 aagagagaatcgaagagtgttggtgatggagagaaactgtttggagacgagtgagagagatttcaagtagtgattatcgtctttgaggaatttgaagaca 41900217  T
Q  137 cattcccaacactcatctggtagatatgaaccagaaatcattgattttcttcttctttt 195  Q
    |||||||||||||||||||||| ||||||||||||| | || |||||||||||| ||||    
T  41900216 cattcccaacactcatctggtaaatatgaaccagaacttatcgattttcttcttttttt 41900158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 21 - 93
Target Start/End: Original strand, 32268755 - 32268825
Alignment:
Q  21 ggatcatagactgtgaaagagataatcgaagacggttggtgatggagagtaactgtttggagacgatggagag 93  Q
    |||||||||||||||| |||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  32268755 ggatcatagactgtgagagaga--atcgaagacggttggtgatggagagtaactgtttggagacgatggagag 32268825  T

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Target: chr5; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 112 - 187
Target Start/End: Complemental strand, 41886346 - 41886271
Alignment:
Q  112 gttgtctttcaagaatttgaagacacattcccaacactcatctggtagatatgaaccagaaatcattgattttctt 187  Q
    ||||||||||| |||||||||||||||||||||||||||||| |||| |||  |||||  |||||||| |||||||    
T  41886346 gttgtctttcaggaatttgaagacacattcccaacactcatcaggtaaatagaaaccaccaatcattgtttttctt 41886271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 45 - 94
Target Start/End: Original strand, 12846943 - 12846992
Alignment:
Q  45 atcgaagacggttggtgatggagagtaactgtttggagacgatggagaga 94  Q
    |||| |||||||||||||||||||| ||||| ||||| |||| |||||||    
T  12846943 atcggagacggttggtgatggagaggaactgcttggaaacgagggagaga 12846992  T

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Target: chr7 (Bit Score: 44; Significance: 3e-16; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 38 - 105
Target Start/End: Complemental strand, 15091414 - 15091347
Alignment:
Q  38 agagataatcgaagacggttggtgatggagagtaactgtttggagacgatggagagagatttcaagca 105  Q
    ||||| ||| |||||| ||||||||||||||| |||||||||||||||| ||||||||| ||||||||    
T  15091414 agagaaaatagaagactgttggtgatggagaggaactgtttggagacgagggagagagaattcaagca 15091347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 41 - 103
Target Start/End: Complemental strand, 10168868 - 10168806
Alignment:
Q  41 gataatcgaagacggttggtgatggagagtaactgtttggagacgatggagagagatttcaag 103  Q
    ||||||||||||  ||||||||||||||| |||||||||||||| | ||| ||||| ||||||    
T  10168868 gataatcgaagagtgttggtgatggagaggaactgtttggagacaagggatagagaattcaag 10168806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 41 - 103
Target Start/End: Complemental strand, 10176393 - 10176331
Alignment:
Q  41 gataatcgaagacggttggtgatggagagtaactgtttggagacgatggagagagatttcaag 103  Q
    ||||||||||||  ||||||||||||||| |||||||||||||| | ||| ||||| ||||||    
T  10176393 gataatcgaagagtgttggtgatggagaggaactgtttggagacaagggatagagaattcaag 10176331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 125 - 166
Target Start/End: Original strand, 10616209 - 10616250
Alignment:
Q  125 aatttgaagacacattcccaacactcatctggtagatatgaa 166  Q
    |||||||||| |||||||||||||||||| |||| |||||||    
T  10616209 aatttgaagatacattcccaacactcatcaggtaaatatgaa 10616250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 38 - 99
Target Start/End: Original strand, 2460597 - 2460658
Alignment:
Q  38 agagataatcgaagacggttggtgatggagagtaactgtttggagacgatggagagagattt 99  Q
    ||||| ||||| ||||| |||||||||||||| |||||||||||||| ||||||||||||||    
T  2460597 agagagaatcggagacgattggtgatggagaggaactgtttggagaccatggagagagattt 2460658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 44 - 117
Target Start/End: Complemental strand, 2367729 - 2367656
Alignment:
Q  44 aatcgaagacggttggtgatggagagtaactgtttggagacgatggagagagatttcaagcatcgattgttgtc 117  Q
    ||||| |||||||||||||||||||| || ||||||||||||||||| |||| || |||| | || ||||||||    
T  2367729 aatcggagacggttggtgatggagagaaattgtttggagacgatggaaagaggttccaagtagcggttgttgtc 2367656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 50 - 99
Target Start/End: Original strand, 2547544 - 2547593
Alignment:
Q  50 agacggttggtgatggagagtaactgtttggagacgatggagagagattt 99  Q
    ||||||||||||||||| || ||||||||||||||||||||||| |||||    
T  2547544 agacggttggtgatggacagaaactgtttggagacgatggagagcgattt 2547593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 44 - 96
Target Start/End: Complemental strand, 2381430 - 2381378
Alignment:
Q  44 aatcgaagacggttggtgatggagagtaactgtttggagacgatggagagaga 96  Q
    ||||| |||| ||||||||| |||||||||||||||||||||||||| |||||    
T  2381430 aatcggagactgttggtgatcgagagtaactgtttggagacgatggaaagaga 2381378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 38 - 98
Target Start/End: Original strand, 6007665 - 6007725
Alignment:
Q  38 agagataatcgaagacggttggtgatggagagtaactgtttggagacgatggagagagatt 98  Q
    ||||| ||||| |||| ||||||||||||||| |||||||| ||||||| |||||||||||    
T  6007665 agagagaatcggagactgttggtgatggagaggaactgtttcgagacgagggagagagatt 6007725  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 44 - 102
Target Start/End: Original strand, 566629 - 566687
Alignment:
Q  44 aatcgaagacggttggtgatggagagtaactgtttggagacgatggagagagatttcaa 102  Q
    |||||||||| || |||||||||||| |||||||||||||| | ||||||||| |||||    
T  566629 aatcgaagactgtcggtgatggagagaaactgtttggagactaaggagagagaattcaa 566687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 97
Target Start/End: Original strand, 2525763 - 2525816
Alignment:
Q  44 aatcgaagacggttggtgatggagagtaactgtttggagacgatggagagagat 97  Q
    |||||||||| |||||||||||| || |||||||| ||||||| ||||||||||    
T  2525763 aatcgaagactgttggtgatggacagaaactgttttgagacgagggagagagat 2525816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 95
Target Start/End: Original strand, 12124836 - 12124881
Alignment:
Q  50 agacggttggtgatggagagtaactgtttggagacgatggagagag 95  Q
    |||||||||||||||||||| || ||||||||||| ||||||||||    
T  12124836 agacggttggtgatggagagaaattgtttggagacaatggagagag 12124881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 95
Target Start/End: Original strand, 12126892 - 12126937
Alignment:
Q  50 agacggttggtgatggagagtaactgtttggagacgatggagagag 95  Q
    |||||||||||||||||||| || ||||||||||| ||||||||||    
T  12126892 agacggttggtgatggagagaaattgtttggagacaatggagagag 12126937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 103
Target Start/End: Complemental strand, 55907499 - 55907434
Alignment:
Q  38 agagataatcgaagacggttggtgatggagagtaactgtttggagacgatggagagagatttcaag 103  Q
    ||||| |||||||||  ||||||||  ||||| ||||||||||||||| | |||||||||||||||    
T  55907499 agagagaatcgaagagtgttggtgactgagagaaactgtttggagacggttgagagagatttcaag 55907434  T

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Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 96
Target Start/End: Original strand, 2486313 - 2486365
Alignment:
Q  44 aatcgaagacggttggtgatggagagtaactgtttggagacgatggagagaga 96  Q
    ||||| ||||||||||||||||| || |||||||| ||||||| |||||||||    
T  2486313 aatcggagacggttggtgatggacagaaactgttttgagacgagggagagaga 2486365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 96
Target Start/End: Original strand, 5035628 - 5035680
Alignment:
Q  44 aatcgaagacggttggtgatggagagtaactgtttggagacgatggagagaga 96  Q
    |||||||||||||||||||||||||| |||||||| || |||| ||| |||||    
T  5035628 aatcgaagacggttggtgatggagagaaactgttttgaaacgaaggaaagaga 5035680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 84
Target Start/End: Complemental strand, 1547515 - 1547469
Alignment:
Q  38 agagataatcgaagacggttggtgatggagagtaactgtttggagac 84  Q
    ||||| ||||| |||||||||||||||||||| || |||||||||||    
T  1547515 agagagaatcggagacggttggtgatggagaggaattgtttggagac 1547469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 102
Target Start/End: Complemental strand, 2376278 - 2376228
Alignment:
Q  52 acggttggtgatggagagtaactgtttggagacgatggagagagatttcaa 102  Q
    |||||||||||||||||| ||   ||||||||||||||||||||| |||||    
T  2376278 acggttggtgatggagagaaaagttttggagacgatggagagagacttcaa 2376228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 96
Target Start/End: Complemental strand, 2380161 - 2380123
Alignment:
Q  58 ggtgatggagagtaactgtttggagacgatggagagaga 96  Q
    |||||| |||||||||||||||||||||||||| |||||    
T  2380161 ggtgatcgagagtaactgtttggagacgatggaaagaga 2380123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 50 - 99
Target Start/End: Original strand, 2472104 - 2472153
Alignment:
Q  50 agacggttggtgatggagagtaactgtttggagacgatggagagagattt 99  Q
    ||||| |||||||||||||  |||||||||||||| ||||| ||||||||    
T  2472104 agacgattggtgatggagaaaaactgtttggagaccatggaaagagattt 2472153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 105
Target Start/End: Complemental strand, 8445311 - 8445271
Alignment:
Q  65 gagagtaactgtttggagacgatggagagagatttcaagca 105  Q
    |||||||||||||| ||||||||||||||||| || |||||    
T  8445311 gagagtaactgttttgagacgatggagagagactttaagca 8445271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 85
Target Start/End: Complemental strand, 12121049 - 12121009
Alignment:
Q  45 atcgaagacggttggtgatggagagtaactgtttggagacg 85  Q
    ||||||||||||||||||||||||| ||||| || ||||||    
T  12121049 atcgaagacggttggtgatggagaggaactgctttgagacg 12121009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 38 - 105
Target Start/End: Complemental strand, 513493 - 513426
Alignment:
Q  38 agagataatcgaagacggttggtgatggagagtaactgtttggagacgatggagagagatttcaagca 105  Q
    ||||| ||||| |||  |||||||||||||||||||||||| ||||||  ||||||||||||||||||    
T  513493 agagagaatcggagattgttggtgatggagagtaactgttttgagacggcggagagagatttcaagca 513426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 103
Target Start/End: Complemental strand, 51763197 - 51763146
Alignment:
Q  52 acggttggtgatggagagtaactgtttggagacgatggagagagatttcaag 103  Q
    ||||| |||||||||||| ||||||||||| |||||||||||||| ||||||    
T  51763197 acggtgggtgatggagaggaactgtttggaaacgatggagagagaattcaag 51763146  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 44 - 104
Target Start/End: Original strand, 14821628 - 14821688
Alignment:
Q  44 aatcgaagacggttggtgatggagagtaactgtttggagacgatggagagagatttcaagc 104  Q
    ||||||||||| |||||||| ||||| ||||| |||||||||| ||||||| |||||||||    
T  14821628 aatcgaagacgattggtgatagagaggaactgcttggagacgagggagagacatttcaagc 14821688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 96
Target Start/End: Original strand, 6395781 - 6395833
Alignment:
Q  44 aatcgaagacggttggtgatggagagtaactgtttggagacgatggagagaga 96  Q
    ||||||||| | |||||||||||||| ||||| |||||||||| |||||||||    
T  6395781 aatcgaagatgattggtgatggagaggaactgcttggagacgagggagagaga 6395833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 96
Target Start/End: Original strand, 6427432 - 6427480
Alignment:
Q  48 gaagacggttggtgatggagagtaactgtttggagacgatggagagaga 96  Q
    ||||||| |||||||||||||| ||||| |||||||||| |||||||||    
T  6427432 gaagacgattggtgatggagaggaactgcttggagacgagggagagaga 6427480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 84
Target Start/End: Original strand, 6437161 - 6437195
Alignment:
Q  50 agacggttggtgatggagagtaactgtttggagac 84  Q
    |||||||||||||||||||| ||||||||||||||    
T  6437161 agacggttggtgatggagaggaactgtttggagac 6437195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 86
Target Start/End: Complemental strand, 7993361 - 7993319
Alignment:
Q  44 aatcgaagacggttggtgatggagagtaactgtttggagacga 86  Q
    ||||| |||||| ||||||||||||| ||||||||||||||||    
T  7993361 aatcggagacggctggtgatggagaggaactgtttggagacga 7993319  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 103
Target Start/End: Original strand, 32152212 - 32152271
Alignment:
Q  44 aatcgaagacggttggtgatggagagtaactgtttggagacgatggagagagatttcaag 103  Q
    ||||| |||| ||||||||||||||| |||||||||||||||| |||||| || ||||||    
T  32152212 aatcggagactgttggtgatggagaggaactgtttggagacgagggagagtgaattcaag 32152271  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 96
Target Start/End: Original strand, 39516869 - 39516915
Alignment:
Q  50 agacggttggtgatggagagtaactgtttggagacgatggagagaga 96  Q
    |||||||||||||||| ||| || ||| |||||||||||||||||||    
T  39516869 agacggttggtgatggcgagaaattgtctggagacgatggagagaga 39516915  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 103
Target Start/End: Complemental strand, 1036241 - 1036176
Alignment:
Q  38 agagataatcgaagacggttggtgatggagagtaactgtttggagacgatggagagagatttcaag 103  Q
    ||||| |||||||||  ||||||||  ||||| ||||||||||||||| | |||||||||||||||    
T  1036241 agagagaatcgaagagtgttggtgactgagagaaactgtttggagacggttgagagagatttcaag 1036176  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 103
Target Start/End: Complemental strand, 44575230 - 44575177
Alignment:
Q  50 agacggttggtgatggagagtaactgtttggagacgatggagagagatttcaag 103  Q
    ||||| |||||||| ||||| |||||||| ||||||||||||||||| ||||||    
T  44575230 agacgattggtgattgagagaaactgttttgagacgatggagagagacttcaag 44575177  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 93
Target Start/End: Complemental strand, 15838016 - 15837967
Alignment:
Q  44 aatcgaagacggttggtgatggagagtaactgtttggagacgatggagag 93  Q
    ||||| |||||||||||||||||||| |||||||||||||| || |||||    
T  15838016 aatcggagacggttggtgatggagagaaactgtttggagaccatcgagag 15837967  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 103
Target Start/End: Original strand, 33161439 - 33161498
Alignment:
Q  44 aatcgaagacggttggtgatggagagtaactgtttggagacgatggagagagatttcaag 103  Q
    ||||||||||  || ||||||||||| |||||||||||||||| ||| ||||| ||||||    
T  33161439 aatcgaagactattagtgatggagagaaactgtttggagacgagggatagagaattcaag 33161498  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 96
Target Start/End: Original strand, 52085556 - 52085600
Alignment:
Q  52 acggttggtgatggagagtaactgtttggagacgatggagagaga 96  Q
    ||||||||||||||| || |||| ||||||||||||||| |||||    
T  52085556 acggttggtgatggaaaggaactttttggagacgatggaaagaga 52085600  T

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