View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10104A_low_407 (Length: 217)
Name: NF10104A_low_407
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104A_low_407 |
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| [»] scaffold0466 (1 HSPs) |
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Alignment Details
Target: scaffold0466 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: scaffold0466
Description:
Target: scaffold0466; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 4 - 214
Target Start/End: Original strand, 4179 - 4389
Alignment:
| Q |
4 |
attcattgtaccttgacaattgtgcaaactacctttgattgggaaaacgatcatgtttgtggattttcatgaatcaataagtgaaaatgtctcgtttggt |
103 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4179 |
attcattgtaccttgacaattgtgcaaactacctttgtgtgggaaaacgatcatgtttgtggattttcatgaatcaataagtgaaaatgtctcgtttggt |
4278 |
T |
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| Q |
104 |
tgtgattacaggattccagtgaaaggaaaaggttgttaaaccaaagtggattttagaacaatgtctatatgattctgatgttaacaaagaataaaagaac |
203 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| ||| |
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| T |
4279 |
tgtgattataggattccagtgaaaggaaaaggttgttaaaccaaagtgggttttagaacaatgtctatatgattctgatgttaacaaagtataaaataac |
4378 |
T |
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| Q |
204 |
aattggatact |
214 |
Q |
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||||||||||| |
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| T |
4379 |
aattggatact |
4389 |
T |
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Target: chr8 (Bit Score: 127; Significance: 1e-65; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 16 - 214
Target Start/End: Complemental strand, 25809781 - 25809583
Alignment:
| Q |
16 |
ttgacaattgtgcaaactacctttgattgggaaaacgatcatgtttgtggattttcatgaatcaataagtgaaaatgtctcgtttggttgtgattacagg |
115 |
Q |
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| T |
25809781 |
ttgacaatggtgcaaactacctttgtgtggcaaaacaatcatgtttttggattttcatgaatccataaatgaaaatgtctcatttggttgtgattataag |
25809682 |
T |
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| Q |
116 |
attccagtgaaaggaaaaggttgttaaaccaaagtggattttagaacaatgtctatatgattctgatgttaacaaagaataaaagaacaattggatact |
214 |
Q |
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| T |
25809681 |
attccagtgaaaggaaaaggttgttgatccaaagtgggttttagaacaatgtctatatggttttgatgttaacaaagtataaaagaataattggatact |
25809583 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 4 - 136
Target Start/End: Complemental strand, 25622269 - 25622137
Alignment:
| Q |
4 |
attcattgtaccttgacaattgtgcaaactacctttgattgggaaaacgatcatgtttgtggattttcatgaatcaataagtgaaaatgtctcgtttggt |
103 |
Q |
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|||||| |||||||||||| |||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||| |
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| T |
25622269 |
attcatcgtaccttgacaaaggtgcaaactacctttgtttgggaaaacagtcatgtttgtggattttcatgaatcgataagtgaaaatgtctcatttggt |
25622170 |
T |
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| Q |
104 |
tgtgattacaggattccagtgaaaggaaaaggt |
136 |
Q |
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| T |
25622169 |
tgtgattataagattccagttaaaggaaaaggt |
25622137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 217
Target Start/End: Complemental strand, 15753209 - 15753129
Alignment:
| Q |
137 |
tgttaaaccaaagtggattttagaacaatgtctatatgattctgatgttaacaaagaataaaagaacaattggatacttta |
217 |
Q |
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| T |
15753209 |
tgttgaaccaaattggattttagaacaaagtctctaagatttttatgataacaatgtatgtaagaacaattgggtacttta |
15753129 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 213
Target Start/End: Original strand, 19342153 - 19342229
Alignment:
| Q |
137 |
tgttaaaccaaagtggattttagaacaatgtctatatgattctgatgttaacaaagaataaaagaacaattggatac |
213 |
Q |
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| T |
19342153 |
tgttgaaccaaagtgagttttagaacaatgtctctaaagttttgatgataacaatgtatgaaagaacaattggatac |
19342229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 213
Target Start/End: Original strand, 19371651 - 19371727
Alignment:
| Q |
137 |
tgttaaaccaaagtggattttagaacaatgtctatatgattctgatgttaacaaagaataaaagaacaattggatac |
213 |
Q |
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| T |
19371651 |
tgttgaaccaaagtgagttttagaacaatgtctctaaagttttgatgataacaatgtatgaaagaacaattggatac |
19371727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 136 - 214
Target Start/End: Original strand, 12285758 - 12285836
Alignment:
| Q |
136 |
ttgttaaaccaaagtggattttagaacaatgtctatatgattctgatgttaacaaagaataaaagaacaattggatact |
214 |
Q |
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| T |
12285758 |
ttgttgaaccaaagtggattttaaaacaatgtctataaaattttgatgataacaatgtaagaaagaacaattgggtact |
12285836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 136 - 213
Target Start/End: Complemental strand, 20748749 - 20748672
Alignment:
| Q |
136 |
ttgttaaaccaaagtggattttagaacaatgtctatatgattctgatgttaacaaagaataaaagaacaattggatac |
213 |
Q |
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| T |
20748749 |
ttgttaaaccaaagtgggtattagaacaatgtctataaggatacgatgataacaatgtatgaaagaacaattggatac |
20748672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 125 - 214
Target Start/End: Original strand, 23528329 - 23528418
Alignment:
| Q |
125 |
aaaggaaaaggttgttaaaccaaagtggattttagaacaatgtctatatgattctgatgttaacaaagaataaaagaacaattggatact |
214 |
Q |
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| T |
23528329 |
aaaggaagagattgttgaaccaaagtgagttttagaacaatgtctctaaggttttgatgataacaatgtctgaaagaacaattgggtact |
23528418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 214
Target Start/End: Original strand, 36754874 - 36754946
Alignment:
| Q |
142 |
aaccaaagtggattttagaacaatgtctatatgattctgatgttaacaaagaataaaagaacaattggatact |
214 |
Q |
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||||||||||| |||||||||||| ||| || || ||||| |||||| | || |||||||||||||||||| |
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| T |
36754874 |
aaccaaagtgggttttagaacaatatctctaaagttttgatgataacaatgtatgaaagaacaattggatact |
36754946 |
T |
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