View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10104A_low_408 (Length: 216)

Name: NF10104A_low_408
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10104A_low_408
NF10104A_low_408
[»] chr1 (16 HSPs)
chr1 (1-214)||(13244704-13244917)
chr1 (1-131)||(30368291-30368421)
chr1 (1-206)||(13085911-13086116)
chr1 (1-122)||(13271474-13271595)
chr1 (1-123)||(12964058-12964180)
chr1 (1-199)||(13100812-13101009)
chr1 (1-131)||(13094278-13094408)
chr1 (1-206)||(13081048-13081253)
chr1 (1-131)||(13070359-13070489)
chr1 (1-201)||(13007009-13007209)
chr1 (1-131)||(13129707-13129837)
chr1 (1-131)||(13161400-13161530)
chr1 (1-123)||(19279351-19279473)
chr1 (1-201)||(13204268-13204468)
chr1 (1-205)||(13065396-13065600)
chr1 (63-122)||(13010661-13010720)
[»] chr6 (1 HSPs)
chr6 (1-91)||(31380254-31380344)


Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 13244704 - 13244917
Alignment:
Q  1 aagttcatagctttcaatgcaggacctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttc 100  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  13244704 aagttcatagctttcaatgcaggtcctagaagttgtattgggaaagatcttagcttcgttcaaatgaaaatggttgcagcttctttgttatggaagtttc 13244803  T
Q  101 gcatacaggtggtggaaggtcaccctgtaacgctgagaaattctattgcccttcgcatgaaacacggcttaaaggtcgaaatcagtaaaagatgcatttg 200  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  13244804 gcatacaggtggtggaaggtcaccctgtaacgctgagaacttctattgtcgttcgcatgaaacacggcttaaaggtcgaagtcagtaaaagatgcatttg 13244903  T
Q  201 atataacaaagttg 214  Q
    ||||||||||||||    
T  13244904 atataacaaagttg 13244917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 30368291 - 30368421
Alignment:
Q  1 aagttcatagctttcaatgcaggacctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttc 100  Q
    |||||||||||||||||| ||||||||||||||||||| || |||||| |||| || ||||||||||| |||||||||||| | ||||||||||||||||    
T  30368291 aagttcatagctttcaatacaggacctagaagttgtatgggtaaagatcttagtttcgttcaaatgaagatggttgcagctgccttgttatggaagtttc 30368390  T
Q  101 gcatacaggtggtggaaggtcaccctgtaac 131  Q
     ||||||||| ||||||||||||||||||||    
T  30368391 acatacaggtcgtggaaggtcaccctgtaac 30368421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 13086116 - 13085911
Alignment:
Q  1 aagttcatagctttcaatgcaggacctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttc 100  Q
    ||||||||||| || |||||||| ||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||    
T  13086116 aagttcatagcatttaatgcaggtcctcgaagttgtcttgggaaagatattagcattgttcaaatgaaaatggttgcagctgctatgttatggaagtttc 13086017  T
Q  101 gcatacaggtggtggaaggtcaccctgtaacgctgagaaattctattgcccttcgcatgaaacacggcttaaaggtcgaaatcagtaaaagatgcatttg 200  Q
     |||||| || |||||||||||  ||||||| |  |||  ||||||||  || |||||| |||| || || || ||| || | ||||||||||| |||||    
T  13086016 acatacaagttgtggaaggtcattctgtaactccaagagtttctattgttctccgcatggaacatggattcaaagtcaaagttagtaaaagatgaatttg 13085917  T
Q  201 atataa 206  Q
    ||||||    
T  13085916 atataa 13085911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 13271595 - 13271474
Alignment:
Q  1 aagttcatagctttcaatgcaggacctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttc 100  Q
    ||||||||||| ||||||||||| |||||||| ||| |||||||||||||||||||| |||||||||||||||||||||||||| | |||||||||||||    
T  13271595 aagttcatagcattcaatgcaggtcctagaagctgtcttgggaaagatattagctttattcaaatgaaaatggttgcagcttctgtattatggaagtttc 13271496  T
Q  101 gcatacaggtggtggaaggtca 122  Q
     |||||| ||||||||||||||    
T  13271495 acatacatgtggtggaaggtca 13271474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 12964058 - 12964180
Alignment:
Q  1 aagttcatagctttcaatgcaggacctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttc 100  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  | |||| ||||||||||    
T  12964058 aagttcatagcattcaatgcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgctgctaatgtgttgtggaagtttc 12964157  T
Q  101 gcatacaggtggtggaaggtcac 123  Q
     |||| | |||||||||||||||    
T  12964158 acatagaagtggtggaaggtcac 12964180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 13101009 - 13100812
Alignment:
Q  1 aagttcatagctttcaatgcaggacctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttc 100  Q
    |||||||||||||||||| ||||||||||||||||||| || || |||||||||||  |||||||||| ||||| |||||| ||||||||  ||||||||    
T  13101009 aagttcatagctttcaat-caggacctagaagttgtatgggtaaggatattagcttcattcaaatgaagatggtcgcagctgctttgttaccgaagtttc 13100911  T
Q  101 gcatacaggtggtggaaggtcaccctgtaacgctgagaaattctattgcccttcgcatgaaacacggcttaaaggtcgaaatcagtaaaagatgcattt 199  Q
     ||||||||||||||||||||||||| |||| | ||    |||| |||  |||| ||||||||| ||||| |||||| || ||| ||||||||||||||    
T  13100910 acatacaggtggtggaaggtcaccctataaccccgaagctttcttttgttcttcacatgaaacatggcttgaaggtcaaagtcactaaaagatgcattt 13100812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 13094408 - 13094278
Alignment:
Q  1 aagttcatagctttcaatgcaggacctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttc 100  Q
    |||||||||||||||||  ||||||| |||| |||||| || ||||||||||| ||  |||||||||| ||||| |||||| |||||||| |||||||||    
T  13094408 aagttcatagctttcaacacaggacccagaatttgtataggtaaagatattagtttcattcaaatgaagatggtcgcagctgctttgttacggaagtttc 13094309  T
Q  101 gcatacaggtggtggaaggtcaccctgtaac 131  Q
     ||||||||||||||||||||||||||||||    
T  13094308 acatacaggtggtggaaggtcaccctgtaac 13094278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 13081048 - 13081253
Alignment:
Q  1 aagttcatagctttcaatgcaggacctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttc 100  Q
    ||||||||||| || |||||||| || ||||| ||| |||||||||||||||| ||| ||||||||||||||||||||||| |  | ||||  |||||||    
T  13081048 aagttcatagcgtttaatgcaggtccaagaagctgtcttgggaaagatattagttttcttcaaatgaaaatggttgcagctgcagttttatttaagtttc 13081147  T
Q  101 gcatacaggtggtggaaggtcaccctgtaacgctgagaaattctattgcccttcgcatgaaacacggcttaaaggtcgaaatcagtaaaagatgcatttg 200  Q
     ||| |||||||||||||||||| |  |||  |  ||   |||||||  |||||||||| |||| ||||| |||||| ||||  ||||||||||||||||    
T  13081148 acattcaggtggtggaaggtcactcaataattcctagggtttctattctccttcgcatggaacatggctttaaggtcaaaattcgtaaaagatgcatttg 13081247  T
Q  201 atataa 206  Q
    ||||||    
T  13081248 atataa 13081253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 13070359 - 13070489
Alignment:
Q  1 aagttcatagctttcaatgcaggacctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttc 100  Q
    |||||||||||||||||| |||| || ||||||||| | || |||||| |||| ||  |||||||||| ||||| |||||| ||||||||  ||||||||    
T  13070359 aagttcatagctttcaatacaggtccgagaagttgtttgggtaaagatcttagtttcattcaaatgaagatggtcgcagctgctttgttacagaagtttc 13070458  T
Q  101 gcatacaggtggtggaaggtcaccctgtaac 131  Q
     ||||||||||||||||||||||||||||||    
T  13070459 acatacaggtggtggaaggtcaccctgtaac 13070489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 13007209 - 13007009
Alignment:
Q  1 aagttcatagctttcaatgcaggacctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttc 100  Q
    |||||||||||||||||| |||| |||||||||||||| || || |||||||||||  |||||||||| ||||| |||||  ||||||||   |||||||    
T  13007209 aagttcatagctttcaatacaggtcctagaagttgtatgggcaaggatattagcttcattcaaatgaagatggtcgcagcagctttgttaccaaagtttc 13007110  T
Q  101 gcatacaggtggtggaaggtcaccctgtaacgctgagaaattctattgcccttcgcatgaaacacggcttaaaggtcgaaatcagtaaaagatgcatttg 200  Q
     |||| ||||||||| |||||||||| |||| | ||    |||| |||  |||| ||||||||| ||||| |||||  || ||| |||||||||||||||    
T  13007109 acataaaggtggtggcaggtcaccctataaccccgaagctttcttttgttcttcacatgaaacatggcttgaaggttaaagtcactaaaagatgcatttg 13007010  T
Q  201 a 201  Q
    |    
T  13007009 a 13007009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 13129837 - 13129707
Alignment:
Q  1 aagttcatagctttcaatgcaggacctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttc 100  Q
    |||||| ||||||||||  ||||||| |||| |||||| || |||||| |||| ||  |||||||||| ||||| |||||| ||||||||  ||||||||    
T  13129837 aagttcgtagctttcaacacaggacccagaatttgtataggtaaagatcttagtttcattcaaatgaagatggtcgcagctgctttgttacagaagtttc 13129738  T
Q  101 gcatacaggtggtggaaggtcaccctgtaac 131  Q
     ||||||||||||||||||||||||||||||    
T  13129737 acatacaggtggtggaaggtcaccctgtaac 13129707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 13161530 - 13161400
Alignment:
Q  1 aagttcatagctttcaatgcaggacctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttc 100  Q
    ||||||||| |||||||  ||||||| |||| |||||| || |||||| |||| ||  |||||||||| ||||| |||||| |||||||| |||||||||    
T  13161530 aagttcatatctttcaacacaggacccagaatttgtataggtaaagatcttagtttcattcaaatgaagatggtcgcagctgctttgttacggaagtttc 13161431  T
Q  101 gcatacaggtggtggaaggtcaccctgtaac 131  Q
     ||||||||||||||||||||||| ||||||    
T  13161430 acatacaggtggtggaaggtcaccttgtaac 13161400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 19279351 - 19279473
Alignment:
Q  1 aagttcatagctttcaatgcaggacctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttc 100  Q
    ||||||||||| || |||||||| || ||||| ||| | || ||||||||||  ||  ||||||||||||||||||||||| || | |||||||||||||    
T  19279351 aagttcatagcgtttaatgcaggtccgagaagctgtctcggaaaagatattactttccttcaaatgaaaatggttgcagctgctgtattatggaagtttc 19279450  T
Q  101 gcatacaggtggtggaaggtcac 123  Q
    |||||||||| ||||||||||||    
T  19279451 gcatacaggtcgtggaaggtcac 19279473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 13204468 - 13204268
Alignment:
Q  1 aagttcatagctttcaatgcaggacctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttc 100  Q
    |||||||||||||||||| |||| |||||||||||| | || |||||| |||| ||  |||||||||| ||||| |||||| ||||||||  ||| ||||    
T  13204468 aagttcatagctttcaatacaggtcctagaagttgtttgggtaaagatcttagtttcattcaaatgaagatggtcgcagctgctttgttacagaattttc 13204369  T
Q  101 gcatacaggtggtggaaggtcaccctgtaacgctgagaaattctattgcccttcgcatgaaacacggcttaaaggtcgaaatcagtaaaagatgcatttg 200  Q
     |||| || | |||||||||||||||||||| |  |  | |||| |||  |||| ||||||| | || ||||||||  || ||| |||||||||||||||    
T  13204368 acataaagatagtggaaggtcaccctgtaaccccaaagatttcttttgttcttcacatgaaatatggtttaaaggttaaagtcactaaaagatgcatttg 13204269  T
Q  201 a 201  Q
    |    
T  13204268 a 13204268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 13065396 - 13065600
Alignment:
Q  1 aagttcatagctttcaatgcaggacctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttatggaagtttc 100  Q
    ||||||||||||||||||||||| || ||||||||| | || |||||||| | ||| ||| ||||||| |||| ||| ||  || |  |||||||||||     
T  13065396 aagttcatagctttcaatgcagggccaagaagttgtttgggtaaagatatcaccttcgttgaaatgaagatggctgccgcggctatactatggaagtttt 13065495  T
Q  101 gcatacaggtggtggaaggtcaccctgtaacgctgagaaattctattgcccttcgcatgaaacacggcttaaaggtcgaaatcagtaaaagatgcatttg 200  Q
    |||||||  | ||||| ||||| |||||||| |  ||   ||||||| ||||  | |||||||| ||||| ||||||  | ||| |||||||||||||||    
T  13065496 gcatacatttagtggatggtcatcctgtaactccaaggctttctattaccctcggaatgaaacatggcttgaaggtcatagtcactaaaagatgcatttg 13065595  T
Q  201 atata 205  Q
    |||||    
T  13065596 atata 13065600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 122
Target Start/End: Complemental strand, 13010720 - 13010661
Alignment:
Q  63 aatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaaggtca 122  Q
    |||||| ||||| ||||||  |||||||||||| ||||||||||| ||||||||||||||    
T  13010720 aatgaagatggtcgcagctgatttgttatggaaatttcgcatacaagtggtggaaggtca 13010661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 31380254 - 31380344
Alignment:
Q  1 aagttcatagctttcaatgcaggacctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgcagcttctttgttat 91  Q
    ||||||||| |||||||| |||||||  ||||||||||||| |||||| |||| ||  ||||||| || |||  ||| |||||||||||||    
T  31380254 aagttcatatctttcaatacaggacccggaagttgtattggtaaagatcttagtttcattcaaattaagatgtctgcggcttctttgttat 31380344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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