View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10104A_low_41 (Length: 413)

Name: NF10104A_low_41
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10104A_low_41
NF10104A_low_41
[»] chr2 (2 HSPs)
chr2 (1-205)||(27289060-27289267)
chr2 (321-362)||(26533837-26533878)
[»] chr1 (1 HSPs)
chr1 (149-190)||(36293343-36293384)
[»] chr7 (1 HSPs)
chr7 (322-359)||(28145719-28145756)
[»] chr5 (1 HSPs)
chr5 (322-362)||(30599082-30599122)
[»] chr3 (1 HSPs)
chr3 (322-358)||(3028561-3028597)


Alignment Details
Target: chr2 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 27289267 - 27289060
Alignment:
Q  1 aataatattaaagcttgtattatttctctcctcgttttt-atcgaaaatctataa-ctttaaaacattctttgcgatgcatcaggaaactactggccctg 98  Q
    |||||||||||||||| |||||||||| ||||| ||||| ||| ||||||||||| |||||||||||||||  |||| ||||||||||||||||||||||    
T  27289267 aataatattaaagcttttattatttctatcctctttttttatctaaaatctataaactttaaaacattcttgtcgattcatcaggaaactactggccctg 27289168  T
Q  99 agatatggagagattctgcagggaaagttgatgcccttgtagccggt-ataggaacaataacaggtgcagggaaattcctcaaggagagaaaccctggaa 197  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27289167 agatatggagagactctgcagggaaagttgatgcccttgtagccggtaataggaacaataacaggtgcagggaaattcctcaaggagagaaaccctggaa 27289068  T
Q  198 tcaaggtt 205  Q
    ||||||||    
T  27289067 tcaaggtt 27289060  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 321 - 362
Target Start/End: Complemental strand, 26533878 - 26533837
Alignment:
Q  321 caaatgttagtatattagttgctatgtttgtattttctcctt 362  Q
    ||||||||||||||||||||| |||||| |||||||||||||    
T  26533878 caaatgttagtatattagttgttatgttagtattttctcctt 26533837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 149 - 190
Target Start/End: Original strand, 36293343 - 36293384
Alignment:
Q  149 ggaacaataacaggtgcagggaaattcctcaaggagagaaac 190  Q
    ||||||||||||||||| ||||| ||||||||||||||||||    
T  36293343 ggaacaataacaggtgctgggaagttcctcaaggagagaaac 36293384  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 322 - 359
Target Start/End: Original strand, 28145719 - 28145756
Alignment:
Q  322 aaatgttagtatattagttgctatgtttgtattttctc 359  Q
    |||||||||||||||||||||||| || ||||||||||    
T  28145719 aaatgttagtatattagttgctatattagtattttctc 28145756  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 322 - 362
Target Start/End: Original strand, 30599082 - 30599122
Alignment:
Q  322 aaatgttagtatattagttgctatgtttgtattttctcctt 362  Q
    ||||||||||||||| |||| |||||| |||||||||||||    
T  30599082 aaatgttagtatattggttgttatgttcgtattttctcctt 30599122  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 322 - 358
Target Start/End: Original strand, 3028561 - 3028597
Alignment:
Q  322 aaatgttagtatattagttgctatgtttgtattttct 358  Q
    |||||||||||||||||||| |||||| |||||||||    
T  3028561 aaatgttagtatattagttgttatgttagtattttct 3028597  T

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