View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10104A_low_414 (Length: 214)
Name: NF10104A_low_414
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104A_low_414 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 33 - 194
Target Start/End: Original strand, 3923726 - 3923887
Alignment:
| Q |
33 |
atgaaagatgcaggtgggtgaattctaattttcttcctaaatatgacataatggtatttggatggttcctcatctatgcatttgcaattgtaattttgtt |
132 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3923726 |
atgaaagatgcaggtgggtgaattctaattttcttcctaaatatgacataatggtatttggatggttcctcatctatgcatttgcaattgtaattttgtt |
3923825 |
T |
|
| Q |
133 |
atagatagagtgggaagtcacattgtaagaaatagagtttacgtgtggttgatgaagtttct |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3923826 |
atagatagagtgggaagtcacattgtaagaaatagagtttacgtgtggttgatgaagtttct |
3923887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 99
Target Start/End: Complemental strand, 7421304 - 7421245
Alignment:
| Q |
40 |
atgcaggtgggtgaattctaattttcttcctaaatatgacataatggtatttggatggtt |
99 |
Q |
| |
|
|||| ||||| ||||||||||||||||||| |||||| |||| ||||||||||| ||||| |
|
|
| T |
7421304 |
atgctggtggttgaattctaattttcttccaaaatatcacatcatggtatttgggtggtt |
7421245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 91
Target Start/End: Complemental strand, 14202120 - 14202065
Alignment:
| Q |
36 |
aaagatgcaggtgggtgaattctaattttcttcctaaatatgacataatggtattt |
91 |
Q |
| |
|
|||||||| |||| |||||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
14202120 |
aaagatgctagtggttgaattctaaatttcttcctaaatatgacatcatggtattt |
14202065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 36 - 93
Target Start/End: Complemental strand, 13574018 - 13573961
Alignment:
| Q |
36 |
aaagatgcaggtgggtgaattctaattttcttcctaaatatgacataatggtatttgg |
93 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||| ||||| | || ||| ||||||| |
|
|
| T |
13574018 |
aaagatgctggtggttgaattctaattttcttccttaatataatatcatgctatttgg |
13573961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University