View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10104A_low_418 (Length: 213)

Name: NF10104A_low_418
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10104A_low_418
NF10104A_low_418
[»] chr7 (18 HSPs)
chr7 (1-213)||(21714091-21714303)
chr7 (1-203)||(21651977-21652179)
chr7 (16-213)||(21788152-21788349)
chr7 (1-213)||(21628033-21628245)
chr7 (70-213)||(21646720-21646863)
chr7 (1-213)||(21704551-21704763)
chr7 (5-213)||(21785315-21785526)
chr7 (6-108)||(21763978-21764077)
chr7 (5-108)||(21771873-21771976)
chr7 (5-108)||(21725808-21725911)
chr7 (1-213)||(21808193-21808408)
chr7 (93-212)||(21745532-21745651)
chr7 (65-213)||(21681622-21681770)
chr7 (1-192)||(21992078-21992272)
chr7 (1-211)||(21664003-21664216)
chr7 (1-74)||(21741014-21741087)
chr7 (65-200)||(15713595-15713730)
chr7 (157-213)||(21623257-21623313)
[»] scaffold0182 (2 HSPs)
scaffold0182 (6-213)||(25223-25430)
scaffold0182 (5-73)||(34446-34514)


Alignment Details
Target: chr7 (Bit Score: 109; Significance: 5e-55; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 21714091 - 21714303
Alignment:
Q  1 tattatattgaacaaatgatggcatcccaaactattaaagaaaaatttgtgcagctacaacaatcaaagcaaacaccccaaaattcacgaccaaagatac 100  Q
    ||||||||||||  || |||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||||| |||||||    
T  21714091 tattatattgaatgaaggatggcatcccaaactattaaagaaaaatttgtggagctacaaaaatcaatgcaaacaccccaaaattcacgaccgaagatac 21714190  T
Q  101 agagggtgacagatcatctcaaaaatcgaacaagttttgaggtgcattacattccgaagttggtgtcatttggtcctatccatcatgacaatccaaatct 200  Q
    | ||||||   || | | ||| |||| |||||| |||||||  |||||||   || ||||| |||||||| |||||||||||||||||||||||||||||    
T  21714191 aaagggtggttgaccgtttcagaaatagaacaaattttgagaagcattactcacccaagtttgtgtcattaggtcctatccatcatgacaatccaaatct 21714290  T
Q  201 gaagataggagag 213  Q
    ||||| |||||||    
T  21714291 gaagaaaggagag 21714303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 21651977 - 21652179
Alignment:
Q  1 tattatattgaacaaatgatggcatcccaaactattaaagaaaaatttgtgcagctacaacaatcaaagcaaacaccccaaaattcacgaccaaagatac 100  Q
    |||||||||||   ||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||    
T  21651977 tattatattgattgaatgatggcatcccaaactattaaagaaaaatttgtggaactacaaaaatcaaagcaaacaccccaaaattcacgaccaaagatac 21652076  T
Q  101 agagggtgacagatcatctcaaaaatcgaacaagttttgaggtgcattacattccgaagttggtgtcatttggtcctatccatcatgacaatccaaatct 200  Q
    | |||||| || |  |||||| |||| |||  | |||||||   |||||||  || ||||| || ||| | ||||||||||||||||||||| ||||| |    
T  21652077 aaagggtgccacagtatctcagaaatagaaacaattttgagaaacattacacccccaagtttgtttcaataggtcctatccatcatgacaatacaaatat 21652176  T
Q  201 gaa 203  Q
    |||    
T  21652177 gaa 21652179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 16 - 213
Target Start/End: Original strand, 21788152 - 21788349
Alignment:
Q  16 atgatggcatcccaaactattaaagaaaaatttgtgcagctacaacaatcaaagcaaacaccccaaaattcacgaccaaagatacagagggtgacagatc 115  Q
    ||||||||||||||||||||||| |||||||||||| || ||||| ||||||||||||||||||||||||||||||| || ||||| |||||| ||||      
T  21788152 atgatggcatcccaaactattaatgaaaaatttgtggagttacaaaaatcaaagcaaacaccccaaaattcacgaccgaaaatacaaagggtggcagagt 21788251  T
Q  116 atctcaaaaatcgaacaagttttgaggtgcattacattccgaagttggtgtcatttggtcctatccatcatgacaatccaaatctgaagataggagag 213  Q
    |||||| |||| ||| ||  ||||||  |||||||   || |||||| ||||  | ||||||||||||||||||||  ||||| ||||| ||||||||    
T  21788252 atctcagaaatagaaaaaactttgagaagcattactcgcccaagttgttgtcggtaggtcctatccatcatgacaacacaaatttgaagttaggagag 21788349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 21628033 - 21628245
Alignment:
Q  1 tattatattgaacaaatgatggcatcccaaactattaaagaaaaatttgtgcagctacaacaatcaaagcaaacaccccaaaattcacgaccaaagatac 100  Q
    ||||||||||||  ||||||||||||||||||||||||||||||||||||| || || || | |||||||||||||||| |||| |||||||||||||||    
T  21628033 tattatattgaaagaatgatggcatcccaaactattaaagaaaaatttgtggagttaaaaaattcaaagcaaacaccccgaaatgcacgaccaaagatac 21628132  T
Q  101 agagggtgacagatcatctcaaaaatcgaacaagttttgaggtgcattacattccgaagttggtgtcatttggtcctatccatcatgacaatccaaatct 200  Q
    | |||||| | |||||||||| ||||  || |  ||||| |  | |||||   || ||||| |||||| | |||||||||||||||| || | |||||||    
T  21628133 aaagggtggccgatcatctcagaaataaaaaagattttgggaagtattactcacccaagtttgtgtcaataggtcctatccatcatggcagtacaaatct 21628232  T
Q  201 gaagataggagag 213  Q
    ||| |||||||||    
T  21628233 gaacataggagag 21628245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 70 - 213
Target Start/End: Original strand, 21646720 - 21646863
Alignment:
Q  70 caaacaccccaaaattcacgaccaaagatacagagggtgacagatcatctcaaaaatcgaacaagttttgaggtgcattacattccgaagttggtgtcat 169  Q
    |||||||||||||||||||||||||||||||| |||||| || |  |||||| |||| ||||||  ||||||| ||||||||  || ||||||||||||     
T  21646720 caaacaccccaaaattcacgaccaaagatacaaagggtgccacagtatctcagaaatagaacaaaatttgaggagcattacacccccaagttggtgtcaa 21646819  T
Q  170 ttggtcctatccatcatgacaatccaaatctgaagataggagag 213  Q
    | |||||||||||||||||||||||||| |||||||||||||||    
T  21646820 taggtcctatccatcatgacaatccaaagctgaagataggagag 21646863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 21704551 - 21704763
Alignment:
Q  1 tattatattgaacaaatgatggcatcccaaactattaaagaaaaatttgtgcagctacaacaatcaaagcaaacaccccaaaattcacgaccaaagatac 100  Q
    ||||||||||||  ||||||||||||||||||||||||||||||||||||  || || || | |||||||||||||| | |||| |||||||||||||||    
T  21704551 tattatattgaatgaatgatggcatcccaaactattaaagaaaaatttgtcgagttaaaaaattcaaagcaaacacctccaaatgcacgaccaaagatac 21704650  T
Q  101 agagggtgacagatcatctcaaaaatcgaacaagttttgaggtgcattacattccgaagttggtgtcatttggtcctatccatcatgacaatccaaatct 200  Q
    | ||||||  |||  |||||| || | ||| ||  ||||||  |||||||   || ||||| |||||  | ||||||||||||||||||||||||| |||    
T  21704651 aaagggtgcaagagtatctcagaagtagaaaaaactttgagcagcattactcacccaagttagtgtcgataggtcctatccatcatgacaatccaactct 21704750  T
Q  201 gaagataggagag 213  Q
    |||| ||||||||    
T  21704751 gaagttaggagag 21704763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 5 - 213
Target Start/End: Original strand, 21785315 - 21785526
Alignment:
Q  5 atattgaacaaatgatggcatcccaaacta---ttaaagaaaaatttgtgcagctacaacaatcaaagcaaacaccccaaaattcacgaccaaagataca 101  Q
    ||||||||  ||||||| ||||||||||||   || || ||||| ||||| ||||| || | |||||||||| |||||||||||||||||||||||||||    
T  21785315 atattgaatcaatgatgacatcccaaactacccttgaaaaaaaaattgtggagctagaaaattcaaagcaaataccccaaaattcacgaccaaagataca 21785414  T
Q  102 gagggtgacagatcatctcaaaaatcgaacaagttttgaggtgcattacattccgaagttggtgtcatttggtcctatccatcatgacaatccaaatctg 201  Q
     ||||||  |||  |||| | |||| | | ||  ||||||  |||||||   || ||||| |||||| | ||||||||||||||||||||||||||||||    
T  21785415 aagggtgcaagagtatctaagaaataggaaaaactttgagaagcattactcacccaagttagtgtcaataggtcctatccatcatgacaatccaaatctg 21785514  T
Q  202 aagataggagag 213  Q
    |||| |||||||    
T  21785515 aagacaggagag 21785526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 6 - 108
Target Start/End: Original strand, 21763978 - 21764077
Alignment:
Q  6 tattgaacaaatgatggcatcccaaactattaaagaaaaatttgtgcagctacaacaatcaaagcaaacaccccaaaattcacgaccaaagatacagagg 105  Q
    |||||||  ||||||||||||||||||| ||||||||||||||||| ||||||||   ||||||||||||||||||||||||||||| |||||||| |||    
T  21763978 tattgaatgaatgatggcatcccaaactcttaaagaaaaatttgtggagctacaa---tcaaagcaaacaccccaaaattcacgacccaagatacaaagg 21764074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 5 - 108
Target Start/End: Original strand, 21771873 - 21771976
Alignment:
Q  5 atattgaacaaatgatggcatcccaaactattaaagaaaaatttgtgcagctacaacaatcaaagcaaacaccccaaaattcacgaccaaagatacagag 104  Q
    ||||||||  ||||||||||||| ||||||||||||||||||||||| | |||||| |||||||||||| ||||||||||||| |||| |||||||| ||    
T  21771873 atattgaatgaatgatggcatccgaaactattaaagaaaaatttgtggaactacaaaaatcaaagcaaataccccaaaattcaagaccgaagatacaaag 21771972  T
Q  105 ggtg 108  Q
    ||||    
T  21771973 ggtg 21771976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 5 - 108
Target Start/End: Original strand, 21725808 - 21725911
Alignment:
Q  5 atattgaacaaatgatggcatcccaaactattaaagaaaaatttgtgcagctacaacaatcaaagcaaacaccccaaaattcacgaccaaagatacagag 104  Q
    ||||||||  ||||||||||||| ||||||||||||||||||||||| | |||||| |||||||||||| | ||||||||||| |||| |||||||| ||    
T  21725808 atattgaatgaatgatggcatccgaaactattaaagaaaaatttgtggaactacaaaaatcaaagcaaatatcccaaaattcaagaccgaagatacaaag 21725907  T
Q  105 ggtg 108  Q
    ||||    
T  21725908 ggtg 21725911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 21808408 - 21808193
Alignment:
Q  1 tattatattgaacaaatgatggcatcccaaacta---ttaaagaaaaatttgtgcagctacaacaatcaaagcaaacaccccaaaattcacgaccaaaga 97  Q
    ||||||||||||  |||||||| |||||||||||   || || ||||  ||||| ||||| || | ||||| |||| |||||||||||||||||||||||    
T  21808408 tattatattgaatgaatgatggaatcccaaactacccttgaaaaaaagattgtggagctaaaaaattcaaatcaaataccccaaaattcacgaccaaaga 21808309  T
Q  98 tacagagggtgacagatcatctcaaaaatcgaacaagttttgaggtgcattacattccgaagttggtgtcatttggtcctatccatcatgacaatccaaa 197  Q
    |||| |||||| | ||  |||||| |||| |||||| | |||||  |||||||   || |||||||| ||| | ||||||||||||||||  |||  |||    
T  21808308 tacaaagggtggctgagtatctcagaaatagaacaaatcttgagaagcattactcacccaagttggtatcaataggtcctatccatcatggaaatataaa 21808209  T
Q  198 tctgaagataggagag 213  Q
    ||||||| ||||||||    
T  21808208 tctgaagttaggagag 21808193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 93 - 212
Target Start/End: Original strand, 21745532 - 21745651
Alignment:
Q  93 aaagatacagagggtgacagatcatctcaaaaatcgaacaagttttgaggtgcattacattccgaagttggtgtcatttggtcctatccatcatgacaat 192  Q
    ||||||||| ||||||  ||| ||||||| |||| |||||| |||||||  |||||||   || |||||||||||||| |||||||||||||||||||||    
T  21745532 aaagatacaaagggtggtagaccatctcataaatagaacaaattttgagaagcattactcacccaagttggtgtcattaggtcctatccatcatgacaat 21745631  T
Q  193 ccaaatctgaagataggaga 212  Q
    |||||||| |||| ||||||    
T  21745632 ccaaatctaaagacaggaga 21745651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 65 - 213
Target Start/End: Original strand, 21681622 - 21681770
Alignment:
Q  65 caaagcaaacaccccaaaattcacgaccaaagatacagagggtgacagatcatctcaaaaatcgaacaagttttgaggtgcattacattccgaagttggt 164  Q
    |||| |||||||||||||||||||||||||||||||| |||||| ||    || |||||||| ||||||  ||| ||| ||||||||  || ||||| ||    
T  21681622 caaatcaaacaccccaaaattcacgaccaaagatacaaagggtgccacggtatgtcaaaaatagaacaaaatttaaggagcattacagccccaagtttgt 21681721  T
Q  165 gtcatttggtcctatccatcatgacaatccaaatctgaagataggagag 213  Q
    |||| | |||||||||||||||| |||| || |||| ||| ||||||||    
T  21681722 gtcaataggtcctatccatcatggcaatacagatctaaagttaggagag 21681770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 21992078 - 21992272
Alignment:
Q  1 tattatattgaacaaatgatggcatcccaaacta---ttaaagaaaaatttgtgcagctacaacaatcaaagcaaacaccccaaaattcacgaccaaaga 97  Q
    ||||||||||||  |||||||||||||||||||    || |||||||| ||||| ||||| || | |||||||||| |||||||||||||||| || |||    
T  21992078 tattatattgaatgaatgatggcatcccaaacttcccttgaagaaaaaattgtggagctagaaaattcaaagcaaataccccaaaattcacgaacacaga 21992177  T
Q  98 tacagagggtgacagatcatctcaaaaatcgaacaagttttgaggtgcattacattccgaagttggtgtcatttggtcctatccatcatgacaat 192  Q
    |||| |||||| ||||  ||||||||||| ||| |   ||||||  ||| |||   || || ||||||||| | |||||||||||||||| ||||    
T  21992178 tacaaagggtggcagagtatctcaaaaatagaaaagactttgagaagcactactcacccaaattggtgtcaataggtcctatccatcatggcaat 21992272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 21664003 - 21664216
Alignment:
Q  1 tattatattgaacaaatgatggcatcccaaacta---ttaaagaaaaatttgtgcagctacaacaatcaaagcaaacaccccaaaattcacgaccaaaga 97  Q
    ||||||||||||  ||||||||||||||||||||   || || ||||| ||||| ||||| || | |||||||||| |||||||| ||||||||||||||    
T  21664003 tattatattgaaagaatgatggcatcccaaactacccttgaaaaaaaaattgtggagctagaaaattcaaagcaaataccccaaagttcacgaccaaaga 21664102  T
Q  98 tacagagggtgacagatcatctcaaaaatcgaacaagttttgaggtgcattacattccgaagttggtgtcatttggtcctatccatcatgacaatccaaa 197  Q
    |||| |||||| || |  |||||| |||  ||| ||  ||||||  | |||||   || |||||  ||||| | |||||||||||||||| |||| || |    
T  21664103 tacaaagggtgccacacaatctcagaaacagaaaaaactttgagaagtattactcacccaagttcctgtcaataggtcctatccatcatggcaatacaga 21664202  T
Q  198 tctgaagataggag 211  Q
    ||||||| ||||||    
T  21664203 tctgaagttaggag 21664216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 21741014 - 21741087
Alignment:
Q  1 tattatattgaacaaatgatggcatcccaaactattaaagaaaaatttgtgcagctacaacaatcaaagcaaac 74  Q
    ||||||||||||  ||||||||||||||||||||||||||||||| ||||| |||||||| ||| |||||||||    
T  21741014 tattatattgaatgaatgatggcatcccaaactattaaagaaaaaattgtggagctacaaaaattaaagcaaac 21741087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 65 - 200
Target Start/End: Original strand, 15713595 - 15713730
Alignment:
Q  65 caaagcaaacaccccaaaattcacgaccaaagatacagagggtgacagatcatctcaaaaatcgaacaagttttgaggtgcattacattccgaagttggt 164  Q
    |||||||||||||||||| |||||||||||||||||| |||||| |||   |||||| |||  | | || || |||| ||||||||   || ||||||||    
T  15713595 caaagcaaacaccccaaagttcacgaccaaagatacaaagggtgccaggctatctcagaaaaagtaaaaattatgagatgcattacgcacctaagttggt 15713694  T
Q  165 gtcatttggtcctatccatcatgacaatccaaatct 200  Q
     ||| | || |||||||||||||||||| |||||||    
T  15713695 ttcaataggccctatccatcatgacaatacaaatct 15713730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 157 - 213
Target Start/End: Original strand, 21623257 - 21623313
Alignment:
Q  157 aagttggtgtcatttggtcctatccatcatgacaatccaaatctgaagataggagag 213  Q
    |||||||||||| | |||||||||||||||| |||| ||||||||||| ||||||||    
T  21623257 aagttggtgtcaataggtcctatccatcatggcaatacaaatctgaagttaggagag 21623313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 61; Significance: 2e-26; HSPs: 2)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 6 - 213
Target Start/End: Original strand, 25223 - 25430
Alignment:
Q  6 tattgaacaaatgatggcatcccaaactattaaagaaaaatttgtgcagctacaacaatcaaagcaaacaccccaaaattcacgaccaaagatacagagg 105  Q
    |||||||  |||||||||| |||||||| ||||||||||| ||| | |||||||| ||||||||||||||||||||||||||| ||| |||||||| |||    
T  25223 tattgaatgaatgatggcagcccaaactcttaaagaaaaaattgaggagctacaaaaatcaaagcaaacaccccaaaattcaccacccaagatacaaagg 25322  T
Q  106 gtgacagatcatctcaaaaatcgaacaagttttgagg-tgcattacattccgaagttggtgtcatttggtcctatccatcatgacaatccaaatctgaag 204  Q
    ||| || || | | || |||   | |||  |||||||  | | ||||  || |||||||||||| | |||||||||||||||||||||  ||||||||||    
T  25323 gtggcatattaccgcagaaagataccaa-atttgaggaagtactacaaacccaagttggtgtcaataggtcctatccatcatgacaataaaaatctgaag 25421  T
Q  205 ataggagag 213  Q
     ||||||||    
T  25422 ttaggagag 25430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 5 - 73
Target Start/End: Original strand, 34446 - 34514
Alignment:
Q  5 atattgaacaaatgatggcatcccaaactattaaagaaaaatttgtgcagctacaacaatcaaagcaaa 73  Q
    ||||||||  ||||||||||||| ||||||||||||||||||||||| | |||||| ||||||||||||    
T  34446 atattgaatgaatgatggcatccgaaactattaaagaaaaatttgtggaactacaaaaatcaaagcaaa 34514  T

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