View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10104A_low_419 (Length: 213)
Name: NF10104A_low_419
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104A_low_419 |
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Alignment Details
Target: chr7 (Bit Score: 164; Significance: 8e-88; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 19 - 194
Target Start/End: Complemental strand, 33992689 - 33992514
Alignment:
| Q |
19 |
actaccgtgataccaaatgttgaaaacctattgaatatggcaggacctgctactatccacagcttcttgctttcttcccatacccttttccttagtgact |
118 |
Q |
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| T |
33992689 |
actaccatgataccaaatgttgaaaacctattgaatatggcaggacctgctactatccacagcttcttgctttcttcccatacccttttccttagggact |
33992590 |
T |
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| Q |
119 |
cttcatcctcctctgaagggttttgatgctgcaaaaggttcttgtttagctcttctgatcccatttccacttcttc |
194 |
Q |
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| T |
33992589 |
cttcatcctcctctgaagggttttgatgctgtaaaaggttcttgtttagctcttctgatcccatttccacttcttc |
33992514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 26 - 194
Target Start/End: Complemental strand, 33982924 - 33982756
Alignment:
| Q |
26 |
tgataccaaatgttgaaaacctattgaatatggcaggacctgctactatccacagcttcttgctttcttcccatacccttttccttagtgactcttcatc |
125 |
Q |
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||||||||||||||||||||||| |||| |||||||| |||||||||||||||| |||||||||||||| |||||| ||||||||||||| |||||| || |
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| T |
33982924 |
tgataccaaatgttgaaaacctagtgaacatggcagggcctgctactatccacaacttcttgctttctttccatactcttttccttagtggctcttcttc |
33982825 |
T |
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| Q |
126 |
ctcctctgaagggttttgatgctgcaaaaggttcttgtttagctcttctgatcccatttccacttcttc |
194 |
Q |
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| T |
33982824 |
ctcctctgaagtattttgatgctgcaaaaggttcttgtttagctcttctgatcccatttccacttcttc |
33982756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 8e-17; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 33 - 121
Target Start/End: Original strand, 9219437 - 9219525
Alignment:
| Q |
33 |
aaatgttgaaaacctattgaatatggcaggacctgctactatccacagcttcttgctttcttcccatacccttttccttagtgactctt |
121 |
Q |
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|||||||||||| | ||||||| ||||| ||||| |||| ||| | |||||||||||||||||||||||||||||||||||| |||| |
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| T |
9219437 |
aaatgttgaaaattttgtgaatattgcaggccctgccactacccaaatcttcttgctttcttcccatacccttttccttagtgattctt |
9219525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 50 - 122
Target Start/End: Original strand, 9240524 - 9240596
Alignment:
| Q |
50 |
tgaatatggcaggacctgctactatccacagcttcttgctttcttcccatacccttttccttagtgactcttc |
122 |
Q |
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||||||| ||||| ||||||||| |||| | ||||||||||||||||||||||||||| |||||||| ||||| |
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| T |
9240524 |
tgaatattgcaggccctgctactctccaaatcttcttgctttcttcccataccctttttcttagtgattcttc |
9240596 |
T |
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