View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10104A_low_430 (Length: 208)
Name: NF10104A_low_430
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104A_low_430 |
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Alignment Details
Target: chr7 (Bit Score: 131; Significance: 4e-68; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 26 - 172
Target Start/End: Complemental strand, 36904218 - 36904072
Alignment:
| Q |
26 |
tttttagggttcttagtataatggtttgcttcaaaatttattagaacaatcgctttagtttgccttataaggccattatatttcagtatatgttcttgtt |
125 |
Q |
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| T |
36904218 |
tttttggggttcttagtataatggtttgcttcaaaatttattagaacaatcgctttagtttgccttataaggccgttatatttcagtatatgttcttgtt |
36904119 |
T |
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| Q |
126 |
ttctttttcttttactaaatgagtatacgatcttctatgatgtccat |
172 |
Q |
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| T |
36904118 |
ttctttttcttttactaaatgagtatacgatcttctattatttccat |
36904072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 70 - 172
Target Start/End: Original strand, 37073736 - 37073837
Alignment:
| Q |
70 |
aacaatcgctttagtttgccttataaggccattatatttcagtatatgttcttgttttctt-tttcttttactaaatgagtatacgatcttctatgatgt |
168 |
Q |
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|||||||| ||||| |||||||| |||||||||||||| |||| ||||||||| |||||| |||||||||||| ||||| |||| ||||||||| || | |
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| T |
37073736 |
aacaatcgatttagcttgcctta--aggccattatatttgagtagatgttcttgctttcttctttcttttactatatgagcatacaatcttctattattt |
37073833 |
T |
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| Q |
169 |
ccat |
172 |
Q |
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|||| |
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| T |
37073834 |
ccat |
37073837 |
T |
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