View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10104A_low_438 (Length: 204)
Name: NF10104A_low_438
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104A_low_438 |
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Alignment Details
Target: chr1 (Bit Score: 156; Significance: 4e-83; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 28 - 183
Target Start/End: Complemental strand, 29467307 - 29467152
Alignment:
| Q |
28 |
cagagaaggccgttacatgaaccgaacagagagatgaagttgttggggattttgaaaggaagattgagtttaatgcgggtggttaggttagagaaatcgt |
127 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29467307 |
cagagaaggccgttacatgaaccgaacagagagatgaagttgttggggattttgaaaggaagattgagtttaatgcgggtggttaggttagagaaatcgt |
29467208 |
T |
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| Q |
128 |
tgatttggtagaaatcggagttgtgtcgaaggattaagaaacgattgagggaattt |
183 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29467207 |
tgatttggtagaaatcggagttgtgtcgaaggattaagaaacgattgagggaattt |
29467152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 29 - 185
Target Start/End: Complemental strand, 29452832 - 29452676
Alignment:
| Q |
29 |
agagaaggccgttacatgaaccgaacagagagatgaagttgttggggattttgaaaggaagattgagtttaatgcgggtggttaggttagagaaatcgtt |
128 |
Q |
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| T |
29452832 |
agagaaggccgttacatgaactgaacagagagatgttgttgttggggagtttgaaaggaagattgagtttaatgcgggtggttaggttagagaaatcgtt |
29452733 |
T |
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| Q |
129 |
gatttggtagaaatcggagttgtgtcgaaggattaagaaacgattgagggaattttg |
185 |
Q |
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| T |
29452732 |
gatttggtagaaaacagagttgtgtcgaaggattaaggaacgattgagggaattttg |
29452676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 28 - 182
Target Start/End: Original strand, 29423881 - 29424035
Alignment:
| Q |
28 |
cagagaaggccgttacatgaaccgaacagagagatgaagttgttggggattttgaaaggaagattgagtttaatgcgggtggttaggttagagaaatcgt |
127 |
Q |
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|||||||||||||||||||| |||| |||||||||||||||||||| | |||||||||| |||||||||||| | ||| ||||||||||||||||||| |
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| T |
29423881 |
cagagaaggccgttacatgatccgaccagagagatgaagttgttggagcctttgaaaggaggattgagtttaacggcggtagttaggttagagaaatcgt |
29423980 |
T |
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| Q |
128 |
tgatttggtagaaatcggagttgtgtcgaaggattaagaaacgattgagggaatt |
182 |
Q |
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|||||||||||||||| ||||||||||||||||||||| ||||||||| |||||| |
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| T |
29423981 |
tgatttggtagaaatcagagttgtgtcgaaggattaaggaacgattgaaggaatt |
29424035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 28 - 185
Target Start/End: Complemental strand, 29442841 - 29442684
Alignment:
| Q |
28 |
cagagaaggccgttacatgaaccgaacagagagatgaagttgttggggattttgaaaggaagattgagtttaatgcgggtggttaggttagagaaatcgt |
127 |
Q |
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||||||||||||||||||||||| | ||||| ||| |||| |||| | ||||||||| |||||||||| || ||||||||||||||||||||| | |
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| T |
29442841 |
cagagaaggccgttacatgaacctagaagagacatgcggttgatgggacctgtgaaaggaatgttgagtttaacgccggtggttaggttagagaaatctt |
29442742 |
T |
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| Q |
128 |
tgatttggtagaaatcggagttgtgtcgaaggattaagaaacgattgagggaattttg |
185 |
Q |
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||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||| |
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| T |
29442741 |
cgatttggtagaaatcaaagttgtgtcgaaggattaaggaacgattgaggaaattttg |
29442684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 108; Significance: 2e-54; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 29 - 184
Target Start/End: Original strand, 14550988 - 14551143
Alignment:
| Q |
29 |
agagaaggccgttacatgaaccgaacagagagatgaagttgttggggattttgaaaggaagattgagtttaatgcgggtggttaggttagagaaatcgtt |
128 |
Q |
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||||||| |||||||||||||||| ||||||||||||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14550988 |
agagaagaccgttacatgaaccgagcagagagatgaagttgttgaagccttcgaaaggaagattgagtttaatgcgggtggttaggttagagaaatcgtt |
14551087 |
T |
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| Q |
129 |
gatttggtagaaatcggagttgtgtcgaaggattaagaaacgattgagggaatttt |
184 |
Q |
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||||||||||| || ||| |||||||||||||||||| ||| |||||||||||||| |
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| T |
14551088 |
gatttggtagagattggacttgtgtcgaaggattaaggaacaattgagggaatttt |
14551143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 184
Target Start/End: Complemental strand, 8572882 - 8572827
Alignment:
| Q |
129 |
gatttggtagaaatcggagttgtgtcgaaggattaagaaacgattgagggaatttt |
184 |
Q |
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||||||||||| |||| ||||| |||||| ||||||| |||||||||||||||||| |
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| T |
8572882 |
gatttggtagatatcgtagttgcgtcgaatgattaaggaacgattgagggaatttt |
8572827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 184
Target Start/End: Original strand, 9292699 - 9292751
Alignment:
| Q |
132 |
ttggtagaaatcggagttgtgtcgaaggattaagaaacgattgagggaatttt |
184 |
Q |
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|||||||| |||| | |||||||||||||||||| | || ||||||||||||| |
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| T |
9292699 |
ttggtagagatcgaatttgtgtcgaaggattaaggatcggttgagggaatttt |
9292751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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