View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10104A_low_445 (Length: 201)
Name: NF10104A_low_445
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104A_low_445 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 34051409 - 34051609
Alignment:
| Q |
1 |
aagaaagaagaaaacttccaaattttcttctatcagtgagacttaaatatgtgaaacttggttaccattacttaatctcaaaagctatgtatcttttact |
100 |
Q |
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| T |
34051409 |
aagaaagaagaaaacttccaaattttcttctatcagtgagacttaaatatgtgaaacttggttaccattacttaatctcaaaagctatgtatcttttact |
34051508 |
T |
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| Q |
101 |
cataccactttttggagcagcttcagctcatttatcaactatatcataccatgatattattcaactatatgaaaatctcaaattcaatcttgtatcagta |
200 |
Q |
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| T |
34051509 |
cataccactttttggagcagcttcagctcatttatcaactatatcataccatgatattattcaactgtatgaaaatctcaaattcaatcttgtatcagta |
34051608 |
T |
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| Q |
201 |
a |
201 |
Q |
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| T |
34051609 |
a |
34051609 |
T |
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Target: chr1; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 3 - 187
Target Start/End: Original strand, 15236582 - 15236766
Alignment:
| Q |
3 |
gaaagaagaaaacttccaaattttcttctatcagtgagacttaaatatgtgaaacttggttaccattacttaatctcaaaagctatgtatcttttactca |
102 |
Q |
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|||||||| ||||| || |||||| | |||| |||| ||| |||||||||||||||||||||||||| || || || || |||||||| ||| | | | |
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| T |
15236582 |
gaaagaagtaaactccccaattttttaatatccgtgaaactaaaatatgtgaaacttggttaccattatttgatttctaatgctatgtaccttgttttaa |
15236681 |
T |
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| Q |
103 |
taccactttttggagcagcttcagctcatttatcaactatatcataccatgatattattcaactatatgaaaatctcaaattcaa |
187 |
Q |
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| T |
15236682 |
tacctctccttggagtagcttcagttcacttatcaactttttcaatcaaagatttaatccaaatatatgaaaatctcaaattcaa |
15236766 |
T |
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