View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10104A_low_46 (Length: 409)
Name: NF10104A_low_46
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104A_low_46 |
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Alignment Details
Target: chr1 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 7 - 402
Target Start/End: Original strand, 44187268 - 44187662
Alignment:
| Q |
7 |
caactgacaagccattttgcatataagtaacttcataaagttcaactttgcaatcaaatattaaatcctaataactagactcataaaccttgatggtgag |
106 |
Q |
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||||||||||| | ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||| | |||||| |
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| T |
44187268 |
caactgacaagtcgtttggcatataagtaacttcataaagttcaactttgcaatctaatattaaatcctaagaactagactcataagcctt-agggtgag |
44187366 |
T |
|
| Q |
107 |
aactccacacaaaggctacaaaagaaattaattgtctgcaactctaaacggaagaaggtttttcttgtaaactaccatttggcaacaataattttctact |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44187367 |
aactccacacaaaggctacaaaagaaattaattgtctgcaactccaaacgaaagaaggtttttcttgtaaactaccatttggcaacaataattttctact |
44187466 |
T |
|
| Q |
207 |
ctaacaccaatctcctcaatcaccccggtagtcaagtctaaacaagctagttcataatttggtgttctgaagaatatattgccctctttccaagctccga |
306 |
Q |
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| T |
44187467 |
ctaacaccaatctcctcaatcaccccggtagtcaagtctaaacaagctagttcataatttggtgttctgaagaatatattgccctctttccaagctccgg |
44187566 |
T |
|
| Q |
307 |
taggatttggaatgcaagccaaaacaggttcagtagaatgttgaatgggaaaaggatcaacattgaagagtctaacccaggattccttaacaccaa |
402 |
Q |
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| T |
44187567 |
taggatttggaatgcaagccaaaaaaggttcagtagaatgttgaatgggaaaaggatcaacattgaagagtctaacccaggattccttaacaccaa |
44187662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 7 - 138
Target Start/End: Original strand, 19162856 - 19162988
Alignment:
| Q |
7 |
caactgacaagccattttgcatataagtaacttcataaagttcaactttg-caatcaaatattaaatcctaataactagactcataaaccttgatggtga |
105 |
Q |
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||||| |||||||| |||||||||||| ||||||| |||||||||||| | |||| ||||| ||||||||| ||||||||||||||||||||| ||||| |
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| T |
19162856 |
caactaacaagccagtttgcatataagcaacttcagaaagttcaacttaggcaatagaatatcaaatcctaagaactagactcataaaccttgagggtga |
19162955 |
T |
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| Q |
106 |
gaactccacacaaaggctacaaaagaaattaat |
138 |
Q |
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|||| |||| |||||||| ||||| ||||||| |
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| T |
19162956 |
aaacttcacaaaaaggctataaaagcaattaat |
19162988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 56 - 177
Target Start/End: Original strand, 28866885 - 28867005
Alignment:
| Q |
56 |
gcaatcaaatattaaatcctaataactagactcataaaccttgatggtgagaactccacacaaaggctacaaaagaaattaattgtctgcaactctaaac |
155 |
Q |
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||||| |||||| ||||||||| |||||||||| ||| |||||| ||| | |||||||||||||||||||||| |||||||||||| ||||| ||| |
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| T |
28866885 |
gcaatgaaatatcaaatcctaagaactagactcctaa-ccttgagggtaaaaactccacacaaaggctacaaatacaattaattgtctataactcgaaat |
28866983 |
T |
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| Q |
156 |
ggaagaaggtttttcttgtaaa |
177 |
Q |
| |
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||||||||||||||||| |||| |
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| T |
28866984 |
ggaagaaggtttttcttataaa |
28867005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 56 - 258
Target Start/End: Complemental strand, 28995312 - 28995114
Alignment:
| Q |
56 |
gcaatcaaatattaaatcctaataactagactcataaaccttgatggtgagaactccacacaaaggctacaaaagaaattaattgtctgcaactctaaac |
155 |
Q |
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||||| |||||| ||||||||| |||||||||| | | |||||| ||||| || ||||||||||||||| ||| | |||||||||||| ||||| ||| |
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| T |
28995312 |
gcaatgaaatataaaatcctaagaactagactcctga-ccttgagggtgaaaattccacacaaaggctagaaatgcaattaattgtctataactccaaat |
28995214 |
T |
|
| Q |
156 |
ggaagaaggtttttcttgtaaactaccatttggcaacaataattttctactctaacaccaatctcctcaatcaccccggtagtcaagtctaaacaagcta |
255 |
Q |
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| T |
28995213 |
ggaagaagatttttcttgtaaatgaaaatatgg---caaaactgttctgctttaacatcaatctcctcaatcactccggtagttaaatcaaaacaaacta |
28995117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 166 - 258
Target Start/End: Original strand, 19163077 - 19163166
Alignment:
| Q |
166 |
ttttcttgtaaactaccatttggcaacaataattttctactctaacaccaatctcctcaatcaccccggtagtcaagtctaaacaagctagtt |
258 |
Q |
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|||||||||||||||||| ||| |||| | | |||| || ||||||||||||||||||||| ||||||||| || || ||||||||||||| |
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| T |
19163077 |
ttttcttgtaaactaccacttg---acaaaattgttctgctttaacaccaatctcctcaatcatcccggtagttaaatcaaaacaagctagtt |
19163166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 202 - 261
Target Start/End: Complemental strand, 9764702 - 9764643
Alignment:
| Q |
202 |
ctactctaacaccaatctcctcaatcaccccggtagtcaagtctaaacaagctagttcat |
261 |
Q |
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| T |
9764702 |
ctactttaacatcaatcttctcaatcaccccagtagctaaatctaaacaagctagttcat |
9764643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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