View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10104A_low_47 (Length: 408)

Name: NF10104A_low_47
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10104A_low_47
NF10104A_low_47
[»] chr6 (24 HSPs)
chr6 (3-383)||(10579426-10579805)
chr6 (3-402)||(6596598-6596997)
chr6 (3-388)||(7131665-7132050)
chr6 (3-363)||(7119187-7119547)
chr6 (10-388)||(19632476-19632851)
chr6 (21-387)||(6394912-6395278)
chr6 (3-276)||(6589119-6589392)
chr6 (98-387)||(6426636-6426925)
chr6 (5-286)||(6415998-6416279)
chr6 (21-387)||(6410054-6410438)
chr6 (3-283)||(6432191-6432471)
chr6 (21-203)||(7994051-7994233)
chr6 (3-159)||(6402890-6403046)
chr6 (173-282)||(6423417-6423526)
chr6 (294-387)||(6602872-6602965)
chr6 (322-388)||(7993848-7993914)
chr6 (22-203)||(6594475-6594656)
chr6 (3-159)||(6585150-6585306)
chr6 (172-286)||(6602991-6603105)
chr6 (176-286)||(14820893-14821003)
chr6 (323-387)||(6594270-6594334)
chr6 (174-210)||(9411556-9411592)
chr6 (22-56)||(9411404-9411438)
chr6 (249-281)||(6585073-6585105)
[»] chr3 (3 HSPs)
chr3 (3-286)||(51764226-51764509)
chr3 (3-286)||(13470518-13470801)
chr3 (174-278)||(514519-514623)
[»] chr7 (6 HSPs)
chr7 (3-286)||(10614623-10614906)
chr7 (3-286)||(15091937-15092220)
chr7 (320-374)||(10169816-10169870)
chr7 (320-374)||(10177341-10177395)
chr7 (320-354)||(10167380-10167414)
chr7 (325-387)||(15091818-15091880)
[»] chr1 (9 HSPs)
chr1 (3-286)||(19468285-19468568)
chr1 (305-384)||(29658623-29658702)
chr1 (305-384)||(29691138-29691217)
chr1 (305-384)||(29718650-29718729)
chr1 (298-390)||(33160850-33160942)
chr1 (320-387)||(19468172-19468239)
chr1 (304-384)||(30827447-30827527)
chr1 (178-219)||(9581276-9581317)
chr1 (178-219)||(9586844-9586885)
[»] chr4 (10 HSPs)
chr4 (103-286)||(21834164-21834347)
chr4 (3-159)||(53761685-53761841)
chr4 (3-217)||(8186943-8187160)
chr4 (322-397)||(3438306-3438381)
chr4 (322-376)||(547283-547337)
chr4 (176-222)||(570737-570783)
chr4 (98-203)||(3438432-3438540)
chr4 (300-357)||(10634131-10634188)
chr4 (3-47)||(640945-640989)
chr4 (95-202)||(1524353-1524463)
[»] chr5 (7 HSPs)
chr5 (11-129)||(20478025-20478143)
chr5 (297-387)||(20477749-20477839)
chr5 (174-217)||(41901390-41901433)
chr5 (10-48)||(41901559-41901597)
chr5 (3-47)||(41889579-41889623)
chr5 (298-397)||(32267818-32267917)
chr5 (174-219)||(41889404-41889449)
[»] chr8 (5 HSPs)
chr8 (176-277)||(17627851-17627952)
chr8 (322-381)||(17627729-17627788)
chr8 (10-48)||(18315297-18315335)
chr8 (3-45)||(34936190-34936232)
chr8 (10-47)||(27922545-27922582)


Alignment Details
Target: chr6 (Bit Score: 341; Significance: 0; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 3 - 383
Target Start/End: Complemental strand, 10579805 - 10579426
Alignment:
Q  3 gtgttttatcatcgacttttgtatatgacaagttcaacacctccagctggggaattacaatctttattctaagtcgcttcactcttggacatttggctat 102  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  10579805 gtgttttatcatcaacttttgtatatgacaagttcaacacctccagctggggaattacaatctttattctaagtcgcttcactcttggacatttggctaa 10579706  T
Q  103 gttcaaatgcttaatcttaccacatcttcctgaaacttgaaaaataccttcagatatgtattcgcaagtattcaaatcaagcagctgcaaattggggaaa 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10579705 gttcaaatgcttaatcttaccacatcttcctgaaacttgaaaaataccttcagatatgtattcgcaagtattcaaatcaagcagctgcaaattggggaaa 10579606  T
Q  203 aaggaagctaacattataatcatttcatcacgtaacgatgaatttctacccaaatagagagattttaattgagggtatacaccagatttcactacactct 302  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||    
T  10579605 aaggaagctaacattataatcatttcatcacgtaacaatgaatttctacccaaatagagagattttaattga-ggtatacaccagaattctctacactct 10579507  T
Q  303 ttttcccaatagctgttttttccattttgatctcactaagcgaaggacaatttcttacgagggaaaacaaggctgattctg 383  Q
    || ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10579506 ttgtccaaatagctgtgttttccattttgatctcactaagcgaaggacaatttcttacgagggaaaacaaggctgattctg 10579426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 3 - 402
Target Start/End: Complemental strand, 6596997 - 6596598
Alignment:
Q  3 gtgttttatcatcgacttttgtatatgacaagttcaacacctccagctggggaattacaatctttattctaagtcgcttcactcttggacatttggctat 102  Q
    |||||| |||||| || ||||||  ||||||||||||||||||||||||||||||| |||  ||||||  |||||||||||| |||| ||||| ||||      
T  6596997 gtgtttcatcatcaacatttgtacttgacaagttcaacacctccagctggggaatttcaaagtttatttcaagtcgcttcacacttgaacattcggctca 6596898  T
Q  103 gttcaaatgcttaatcttaccacatcttcctgaaa-cttgaaaaataccttcagatatgtattcgcaagtattcaaatcaagcagctgcaaattggggaa 201  Q
    ||||||||||||||||||| ||||||| ||||||| ||||| ||||||||||||| ||||  |    || ||  || ||||||||||||||||| || ||    
T  6596897 gttcaaatgcttaatcttatcacatct-cctgaaaacttgacaaataccttcagaaatgttattattagaatataagtcaagcagctgcaaattaggaaa 6596799  T
Q  202 aaaggaagctaacattataatcatttcatcacgtaacgatgaatttctacccaaatagagagattttaattgagggtatacaccagatttcactacactc 301  Q
    ||||||||||||  |||||||  |||||| || |||| |  |||||||||||||||||||||| |||||||||||||||||| |||| ||| ||||||||    
T  6596798 aaaggaagctaatcttataatattttcattacttaaccaaaaatttctacccaaatagagagactttaattgagggtatacatcagaattctctacactc 6596699  T
Q  302 tttttcccaatagctgttttttccattttgatctcactaagcgaaggacaatttcttacgagggaaaacaaggctgattctgtgagccttgaacaacgat 401  Q
    |   ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||    
T  6596698 tccgtcccaatagctgtgttttgcattttgatctcactaagcgaaggacaatttcttacgagggaaaacacggctgattctgtgagccttgaacaatgat 6596599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 3 - 388
Target Start/End: Original strand, 7131665 - 7132050
Alignment:
Q  3 gtgttttatcatcgacttttgtatatgacaagttcaacacctccagctggggaattacaatctttattctaagtcgcttcactcttggacatttggctat 102  Q
    |||||| |||||| || || |||| ||||||||||||||||||||||||| |||  ||||  || |||| |||| |||||||||||| ||| | |||||     
T  7131665 gtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctggcgaacaacaaagttcattccaagtagcttcactcttgaacagtgggctaa 7131764  T
Q  103 gttcaaatgcttaatcttaccacatcttcctgaaacttgaaaaataccttcagatatgtattcgcaagtattcaaatcaagcagctgcaaattggggaaa 202  Q
    ||||||||| |||||||||  |||||| | | |||||||| ||||||||||||||||||  | |||||||||||||||||| || || ||||||||||||    
T  7131765 gttcaaatgtttaatcttagaacatctccttaaaacttgacaaataccttcagatatgttattgcaagtattcaaatcaagaagttgtaaattggggaaa 7131864  T
Q  203 aaggaagctaacattataatcatttcatcacgtaacgatgaatttctacccaaatagagagattttaattgagggtatacaccagatttcactacactct 302  Q
    ||||||||||| |||| |||  ||||||||  ||||  | |||||||||| ||||||||||| ||||| ||||| ||||||| ||| ||| |||||||||    
T  7131865 aaggaagctaatattacaattttttcatcagttaaccgtaaatttctacctaaatagagagactttaactgaggatatacactagaattccctacactct 7131964  T
Q  303 ttttcccaatagctgttttttccattttgatctcactaagcgaaggacaatttcttacgagggaaaacaaggctgattctgtgagc 388  Q
     |||||| |||||||| | ||||||||||| ||||||||| ||||| || ||||| ||||| ||| |||||||| |||||||||||    
T  7131965 ctttccctatagctgtgtattccattttgaactcactaagtgaagggcagtttctaacgagtgaatacaaggctaattctgtgagc 7132050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 3 - 363
Target Start/End: Original strand, 7119187 - 7119547
Alignment:
Q  3 gtgttttatcatcgacttttgtatatgacaagttcaacacctccagctggggaattacaatctttattctaagtcgcttcactcttggacatttggctat 102  Q
    |||||| |||||| || || |||| ||||||||||||||||||||||||| |||  ||||  || |||| |||| |||||||||||| ||| | |||||     
T  7119187 gtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctggtgaacaacaaagttcattccaagtagcttcactcttgaacagtgggctaa 7119286  T
Q  103 gttcaaatgcttaatcttaccacatcttcctgaaacttgaaaaataccttcagatatgtattcgcaagtattcaaatcaagcagctgcaaattggggaaa 202  Q
    ||||||||| |||||||||  |||||| | | |||||||| ||||||||||||||||||  | |||||||||||||||||| || || ||||||||||||    
T  7119287 gttcaaatgtttaatcttagaacatctccttaaaacttgacaaataccttcagatatgttattgcaagtattcaaatcaagaagttgtaaattggggaaa 7119386  T
Q  203 aaggaagctaacattataatcatttcatcacgtaacgatgaatttctacccaaatagagagattttaattgagggtatacaccagatttcactacactct 302  Q
    ||||||||||| |||| |||  ||||||||  ||||  | |||||||||| ||||||||||| ||||| ||||| ||||||| ||| ||| |||||||||    
T  7119387 aaggaagctaatattacaattttttcatcagttaaccgtaaatttctacctaaatagagagactttaactgaggatatacactagaattccctacactct 7119486  T
Q  303 ttttcccaatagctgttttttccattttgatctcactaagcgaaggacaatttcttacgag 363  Q
     |||||| |||||||| | ||||||||||| ||||||||| ||||| || ||||| |||||    
T  7119487 ctttccctatagctgtgtattccattttgaactcactaagtgaagggcagtttctaacgag 7119547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 10 - 388
Target Start/End: Original strand, 19632476 - 19632851
Alignment:
Q  10 atcatcgacttttgtatatgacaagttcaacacctccagctggggaattacaatctttattctaagtcgcttcactcttggacatttggctatgttcaaa 109  Q
    |||||| || |||||||| ||||||| ||||||||| |||| ||||| || ||  ||||||| |||| | || ||| ||| ||||   | || |||||||    
T  19632476 atcatcaacctttgtatacgacaagtccaacacctctagcttgggaactagaaagtttattccaagtaggttaactattgaacatcgagttaagttcaaa 19632575  T
Q  110 tgcttaatcttaccacatcttcctgaaacttgaaaaataccttcagatatgtattcgcaagtattcaaatcaagcagctgcaaattggggaaaaaggaag 209  Q
    ||| | ||||||| |||||||    |||||||| ||||| | | ||||||||| | ||||  ||||||||||||| ||| ||||||||| ||||| ||||    
T  19632576 tgcgttatcttacaacatctta---aaacttgacaaatagcattagatatgtaatagcaacgattcaaatcaagccgctacaaattgggaaaaaacgaag 19632672  T
Q  210 ctaacattataatcatttcatcacgtaacgatgaatttctacccaaatagagagattttaattgagggtatacaccagatttcactacactctttttccc 309  Q
    | |||||| ||||| ||||||||| ||||  | |||||| ||||||||||||||| |||||||||||||||||||||   ||| ||||||| | ||| |     
T  19632673 cgaacattgtaatcttttcatcacttaaccgtaaatttcgacccaaatagagagactttaattgagggtatacaccaatattctctacactttcttttca 19632772  T
Q  310 aatagctgttttttccattttgatctcactaagcgaaggacaatttcttacgagggaaaacaaggctgattctgtgagc 388  Q
    ||||| ||  ||||||||||||||||||||||| ||||||||||| || ||||| |||||||| | | |||||||||||    
T  19632773 aatagatgcgttttccattttgatctcactaagtgaaggacaattactaacgagcgaaaacaatgataattctgtgagc 19632851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 21 - 387
Target Start/End: Original strand, 6394912 - 6395278
Alignment:
Q  21 ttgtatatgacaagttcaacacctccagctggggaattacaatctttattctaagtcgcttcactcttggacatttggctatgttcaaatgcttaatctt 120  Q
    |||||| ||||||||||||||||||||||| ||||| | |||  || |||| | || | |||||| ||| |||    |||| ||||||||| |||| |||    
T  6394912 ttgtatttgacaagttcaacacctccagctcgggaactgcaaagttcattccatgtagtttcacttttgaacagaaagctaagttcaaatgtttaagctt 6395011  T
Q  121 accacatcttcctgaaacttgaaaaataccttcagatatgtattcgcaagtattcaaatcaagcagctgcaaattggggaaaaaggaagctaacattata 220  Q
    || |||| |   | |||||||| |||||||||||||||| | |  ||||    |||||||||| ||||| ||||||||||||| |||||  ||||||||     
T  6395012 acaacatttctttaaaacttgacaaataccttcagatatttgtgagcaacgtgtcaaatcaagtagctgtaaattggggaaaatggaagtaaacattatg 6395111  T
Q  221 atcatttcatcacgtaacgatgaatttctacccaaatagagagattttaattgagggtatacaccagatttcactacactctttttcccaatagctgttt 320  Q
    || ||||||||   |||| |  ||||| |||||||||||||||| ||||| ||||||||||||||||| | | | ||| ||| ||||||||||  ||| |    
T  6395112 attatttcatctattaaccagtaatttgtacccaaatagagagagtttaactgagggtatacaccagaatgcccaacagtctctttcccaatacatgtgt 6395211  T
Q  321 tttccattttgatctcactaagcgaaggacaatttcttacgagggaaaacaaggctgattctgtgag 387  Q
    |||||||||| |||||  ||||| ||||||| ||||| ||||| ||||| |||| || |||||||||    
T  6395212 tttccattttaatctcggtaagcaaaggacagtttctaacgagtgaaaaaaaggttgtttctgtgag 6395278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 3 - 276
Target Start/End: Complemental strand, 6589392 - 6589119
Alignment:
Q  3 gtgttttatcatcgacttttgtatatgacaagttcaacacctccagctggggaattacaatctttattctaagtcgcttcactcttggacatttggctat 102  Q
    ||||||||||||  || ||||||| ||||||||||||||||||||||  ||||| |||||  || |||| |||| |||||||| |   |||   |||||     
T  6589392 gtgttttatcattaacatttgtatttgacaagttcaacacctccagcatgggaactacaaagttcattccaagtagcttcactttcttacagaaggctaa 6589293  T
Q  103 gttcaaatgcttaatcttaccacatcttcctgaaacttgaaaaataccttcagatatgtattcgcaagtattcaaatcaagcagctgcaaattggggaaa 202  Q
    |||||||||| ||||||||| ||||||||   | |||||| ||||||||| ||||||||  |  |||| ||| |||||||||| ||  ||||||||||||    
T  6589292 gttcaaatgcctaatcttacaacatcttctcaatacttgacaaatacctttagatatgttattacaagaattgaaatcaagcacctctaaattggggaaa 6589193  T
Q  203 aaggaagctaacattataatcatttcatcacgtaacgatgaatttctacccaaatagagagattttaattgagg 276  Q
    | |||||| |||||||| ||  || |||||| |||| |||||||| |||||||||||||||| |||||||||||    
T  6589192 atggaagcaaacattatgatatttgcatcacttaaccatgaatttttacccaaatagagagactttaattgagg 6589119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 98 - 387
Target Start/End: Original strand, 6426636 - 6426925
Alignment:
Q  98 gctatgttcaaatgcttaatcttaccacatcttcctgaaacttgaaaaataccttcagatatgtattcgcaagtattcaaatcaagcagctgcaaattgg 197  Q
    |||| ||||||||| |||| ||||| |||| | | | |||||| | |||||||||||||||| |    ||||   ||||||||||| ||||| |||||||    
T  6426636 gctaagttcaaatgtttaagcttacaacatttccttaaaacttcacaaataccttcagatatttcacggcaaaccttcaaatcaagtagctgtaaattgg 6426735  T
Q  198 ggaaaaaggaagctaacattataatcatttcatcacgtaacgatgaatttctacccaaatagagagattttaattgagggtatacaccagatttcactac 297  Q
    |||||| ||||||  ||||||| || |||||||||| |||| ||||||||||||||| ||||||||| || |||||||||||||||||||| |   |||     
T  6426736 ggaaaatggaagcatacattatgatgatttcatcacttaaccatgaatttctacccagatagagagacttcaattgagggtatacaccagaatgttctaa 6426835  T
Q  298 actctttttcccaatagctgttttttccattttgatctcactaagcgaaggacaatttcttacgagggaaaacaaggctgattctgtgag 387  Q
    | | ||| ||||||| | |||   ||||||||| ||||||||||  |||||||| ||||| || || |||||||| | || |||||||||    
T  6426836 agtatttatcccaattgatgtgccttccattttaatctcactaattgaaggacagtttctaacaagtgaaaacaatgttgtttctgtgag 6426925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 5 - 286
Target Start/End: Original strand, 6415998 - 6416279
Alignment:
Q  5 gttttatcatcgacttttgtatatgacaagttcaacacctccagctggggaattacaatctttattctaagtcgcttcactcttggacatttggctatgt 104  Q
    ||||||||||  || ||||||| ||||||||||||||||||||| | ||||| |||||  |  |||| | || |||||||| ||  |||   ||||| ||    
T  6415998 gttttatcattaacctttgtatttgacaagttcaacacctccaggttgggaactacaaagtccattccatgtagcttcacttttttacaaaaggctaagt 6416097  T
Q  105 tcaaatgcttaatcttaccacatcttcctgaaacttgaaaaataccttcagatatgtattcgcaagtattcaaatcaagcagctgcaaattggggaaaaa 204  Q
    ||||||||  |||||||| |||| |   | |||||||| ||||||||||||||| |   |  |||  ||||||||||||||||||||||||||||||       
T  6416098 tcaaatgcccaatcttacaacatatctttaaaacttgacaaataccttcagataagagattacaacgattcaaatcaagcagctgcaaattggggaagtt 6416197  T
Q  205 ggaagctaacattataatcatttcatcacgtaacgatgaatttctacccaaatagagagattttaattgagggtatacacca 286  Q
    |||||  |||||||| ||   |||||| | |||| ||  |||| | |||||||||||||| |||||||||||||||||||||    
T  6416198 ggaagaaaacattatgataccttcatcgcttaaccatttattttttcccaaatagagagactttaattgagggtatacacca 6416279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 21 - 387
Target Start/End: Original strand, 6410054 - 6410438
Alignment:
Q  21 ttgtatatgacaagttcaacacctccagctggggaattacaatctttattctaagtcgcttcactcttggacatttggctatgttcaaatgcttaatctt 120  Q
    |||||| |||| |||||||||||| ||||| ||||| | |||  || |||| | || |||||||| ||   || | ||||| || ||||||||||| |||    
T  6410054 ttgtatttgactagttcaacaccttcagcttgggaacttcaaagttcattccatgtagcttcacttttttgcaataggctaagtccaaatgcttaagctt 6410153  T
Q  121 accacatcttcctgaaacttgaaaaataccttcagatatgtattcgcaagtattcaaatcaagcagctgcaaattggggaaaaaggaagctaacattata 220  Q
    || |||| |   | |||||||| |||||||||||||||| |  | ||||    |||||||||| || || |||||||| |||| |||||| ||||  ||     
T  6410154 acaacatttctgtaaaacttgacaaataccttcagatatttgctggcaacccgtcaaatcaagtagttgtaaattgggaaaaatggaagcaaacaaaatg 6410253  T
Q  221 atcatttcatcacgtaacgatgaatttctacccaaatagagagattttaattgagggtatacacca------------------gatttcactacactct 302  Q
    || |||||||||| |||||||| |||   | ||||||||||||| |||||||||||||||||||||                  || | | |||||||||    
T  6410254 attatttcatcacttaacgatgtattgtaatccaaatagagagactttaattgagggtatacaccaaactcaaccaaagaattagaatgccctacactct 6410353  T
Q  303 ttttcccaatagctgttttttccattttgatctcactaagcgaaggacaatttcttacgagggaaaacaaggctgattctgtgag 387  Q
     ||||||||||  |||| ||| ||||||||||||| |||| |||||||||||||| ||||| ||||||  |||| ||||||||||    
T  6410354 ctttcccaatacttgttcttttcattttgatctcattaagtgaaggacaatttctaacgagtgaaaactgggctaattctgtgag 6410438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 3 - 283
Target Start/End: Original strand, 6432191 - 6432471
Alignment:
Q  3 gtgttttatcatcgacttttgtatatgacaagttcaacacctccagctggggaattacaatctttattctaagtcgcttcactcttggacatttggctat 102  Q
    |||||| |||||| ||  |||||| ||||||||||||||||| ||||| ||||| | |||  || |||| | || |||||||| ||  ||| | |||||     
T  6432191 gtgtttcatcatcaacgcttgtatttgacaagttcaacaccttcagcttgggaacttcaaagttcattccatgtagcttcacttttatacaataggctaa 6432290  T
Q  103 gttcaaatgcttaatcttaccacatcttcctgaaacttgaaaaataccttcagatatgtattcgcaagtattcaaatcaagcagctgcaaattggggaaa 202  Q
    ||||||||| ||||  |||| |||||| | | |||||||| |||||||||||  |||    |  ||   |  |||||||||  | |||||||||||||||    
T  6432291 gttcaaatgtttaagtttacaacatctccttaaaacttgacaaataccttcatttatacgatgacaccaacgcaaatcaagatgttgcaaattggggaaa 6432390  T
Q  203 aaggaagctaacattataatcatttcatcacgtaacgatgaatttctacccaaatagagagattttaattgagggtataca 283  Q
    | |||||| |||||||| ||| ||||||  | |||| |||||||   ||||||||||||||| ||||| ||||||||||||    
T  6432391 atggaagcaaacattatgatcctttcattccttaaccatgaattgtgacccaaatagagagactttaactgagggtataca 6432471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 21 - 203
Target Start/End: Complemental strand, 7994233 - 7994051
Alignment:
Q  21 ttgtatatgacaagttcaacacctccagctggggaattacaatctttattctaagtcgcttcactcttggacatttggctatgttcaaatgcttaatctt 120  Q
    |||||| ||||| |||||||||||| ||||  |||| |||||  || ||||  ||| |||||||||||| ||| | |||||||||||||||| | |||||    
T  7994233 ttgtatttgacatgttcaacacctctagcttcggaactacaaagttcattcctagtagcttcactcttgtacaatcggctatgttcaaatgcctgatctt 7994134  T
Q  121 accacatcttcctgaaacttgaaaaataccttcagatatgtattcgcaagtattcaaatcaagcagctgcaaattggggaaaa 203  Q
    || |||| | | | |||| | | ||||||||||||||||    | ||||| ||||||||| |||| ||||||||| |||||||    
T  7994133 acaacatttccttaaaacgtaacaaataccttcagatataccattgcaagaattcaaatcgagcatctgcaaatttgggaaaa 7994051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 3 - 159
Target Start/End: Original strand, 6402890 - 6403046
Alignment:
Q  3 gtgttttatcatcgacttttgtatatgacaagttcaacacctccagctggggaattacaatctttattctaagtcgcttcactcttggacatttggctat 102  Q
    |||||| |||||| || || |||| ||||||||||||||| || || ||||||| | |||  ||||||| |||| |||||||||||| |||    | ||     
T  6402890 gtgtttcatcatcaaccttcgtatctgacaagttcaacacttctagttggggaactgcaaagtttattccaagtagcttcactcttgaacacccagttaa 6402989  T
Q  103 gttcaaatgcttaatcttaccacatcttcctgaaacttgaaaaataccttcagatat 159  Q
    |||||||||| |||| |||| |||||| | | |||||||| ||||||||||||||||    
T  6402990 gttcaaatgcctaatgttacaacatctccttaaaacttgacaaataccttcagatat 6403046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 173 - 282
Target Start/End: Original strand, 6423417 - 6423526
Alignment:
Q  173 ttcaaatcaagcagctgcaaattggggaaaaaggaagctaacattataatcatttcatcacgtaacgatgaatttctacccaaatagagagattttaatt 272  Q
    ||||||||||| || |  ||||| ||||||| |||||| |||||||| || |||||||||| |||| | ||| |   ||||||||||||||| |||||||    
T  6423417 ttcaaatcaagtagttttaaattagggaaaatggaagcaaacattatgatgatttcatcacttaaccacgaagtgtaacccaaatagagagactttaatt 6423516  T
Q  273 gagggtatac 282  Q
    ||||||||||    
T  6423517 gagggtatac 6423526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 294 - 387
Target Start/End: Complemental strand, 6602965 - 6602872
Alignment:
Q  294 ctacactctttttcccaatagctgttttttccattttgatctcactaagcgaaggacaatttcttacgagggaaaacaaggctgattctgtgag 387  Q
    ||||| ||| |||||||||| |||| | ||||||||||||||||||||| |||||||| ||| | || || |||||||||| | ||||||||||    
T  6602965 ctacattctctttcccaatatctgtgtcttccattttgatctcactaagtgaaggacagtttttaacaagtgaaaacaaggataattctgtgag 6602872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 322 - 388
Target Start/End: Complemental strand, 7993914 - 7993848
Alignment:
Q  322 ttccattttgatctcactaagcgaaggacaatttcttacgagggaaaacaaggctgattctgtgagc 388  Q
    |||||||||||| |||| ||| || ||||| ||||| ||||| ||||||||||||||||||||||||    
T  7993914 ttccattttgatttcacgaagtgatggacagtttctaacgagtgaaaacaaggctgattctgtgagc 7993848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 203
Target Start/End: Complemental strand, 6594656 - 6594475
Alignment:
Q  22 tgtatatgacaagttcaacacctccagctggggaattacaatctttattctaagtcgcttcactcttggacatttggctatgttcaaatgcttaatctta 121  Q
    ||||| |||||||| |||||||||||| | ||||| || ||  ||||||| | || |||||||||||| |||   || || || ||||||  ||||||||    
T  6594656 tgtatttgacaagtacaacacctccagtttgggaactaaaaagtttattccatgtagcttcactcttgaacacccggataagtacaaatgtgtaatctta 6594557  T
Q  122 ccacatcttcctgaaacttgaaaaataccttcagatatgtattcgcaagtattcaaatcaagcagctgcaaattggggaaaa 203  Q
      |||||| | | |||||||| |||||||||||||||| |  ||| ||    ||||||||||||||| |||| |||||||||    
T  6594556 taacatctccttaaaacttgacaaataccttcagatatttgatcggaaaacctcaaatcaagcagctccaaagtggggaaaa 6594475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 3 - 159
Target Start/End: Complemental strand, 6585306 - 6585150
Alignment:
Q  3 gtgttttatcatcgacttttgtatatgacaagttcaacacctccagctggggaattacaatctttattctaagtcgcttcactcttggacatttggctat 102  Q
    |||||| |||||| || ||||||| |||||||||||| ||||||| ||||| || || ||  ||||||| |||| |||||||||||| |||    |  |     
T  6585306 gtgtttcatcatcaacctttgtatctgacaagttcaatacctccaactgggtaactaaaaagtttattccaagtagcttcactcttgaacacccagtaaa 6585207  T
Q  103 gttcaaatgcttaatcttaccacatcttcctgaaacttgaaaaataccttcagatat 159  Q
    |||||||||| |||| |||  |||||| | | |||| ||| ||||||||||||||||    
T  6585206 gttcaaatgcctaatattaaaacatctccttaaaacatgacaaataccttcagatat 6585150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 286
Target Start/End: Complemental strand, 6603105 - 6602991
Alignment:
Q  172 attcaaatcaagcagctgcaaattggggaaaaaggaagctaacattataatcatttcatcacgtaacgatgaatttctacccaaatagagagattttaat 271  Q
    |||||||||||| ||||||||| |||||| | | ||||| |||||||| ||  ||| | ||| |||| || ||||   ||| ||||||||||| ||||||    
T  6603105 attcaaatcaagtagctgcaaactggggatagaagaagcaaacattatgattttttgaacacttaaccataaattgtcacctaaatagagagactttaat 6603006  T
Q  272 tgagggtatacacca 286  Q
    |||||||||| ||||    
T  6603005 tgagggtatatacca 6602991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 176 - 286
Target Start/End: Original strand, 14820893 - 14821003
Alignment:
Q  176 aaatcaagcagctgcaaattggggaaaaaggaagctaacattataatcatttcatcacgtaacgatgaatttctacccaaatagagagattttaattgag 275  Q
    |||||||| ||||  ||||| ||||||| ||||||  |||  || || |||||||||  |||| |||||||   ||||||||||||||| || |||||||    
T  14820893 aaatcaagtagctttaaatttgggaaaatggaagcatacaaaatgattatttcatcatttaaccatgaattgtgacccaaatagagagacttcaattgag 14820992  T
Q  276 ggtatacacca 286  Q
    |||||||||||    
T  14820993 ggtatacacca 14821003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 323 - 387
Target Start/End: Complemental strand, 6594334 - 6594270
Alignment:
Q  323 tccattttgatctcactaagcgaaggacaatttcttacgagggaaaacaaggctgattctgtgag 387  Q
    ||||||||||| ||||||||  |||||||| |||| || || |||||||| ||||||||||||||    
T  6594334 tccattttgatatcactaagtaaaggacaacttctaacaagtgaaaacaaagctgattctgtgag 6594270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 9411556 - 9411592
Alignment:
Q  174 tcaaatcaagcagctgcaaattggggaaaaaggaagc 210  Q
    |||||||||||||||||||||||||||||| ||||||    
T  9411556 tcaaatcaagcagctgcaaattggggaaaatggaagc 9411592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 56
Target Start/End: Original strand, 9411404 - 9411438
Alignment:
Q  22 tgtatatgacaagttcaacacctccagctggggaa 56  Q
    ||||||||||||||||||||||||||||| |||||    
T  9411404 tgtatatgacaagttcaacacctccagcttgggaa 9411438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 249 - 281
Target Start/End: Complemental strand, 6585105 - 6585073
Alignment:
Q  249 tacccaaatagagagattttaattgagggtata 281  Q
    |||||||||||||||| ||||||||||||||||    
T  6585105 tacccaaatagagagactttaattgagggtata 6585073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 100; Significance: 2e-49; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 3 - 286
Target Start/End: Complemental strand, 51764509 - 51764226
Alignment:
Q  3 gtgttttatcatcgacttttgtatatgacaagttcaacacctccagctggggaattacaatctttattctaagtcgcttcactcttggacatttggctat 102  Q
    ||||||||||||| ||||||||| |||||||||  |||||||||||||  |||| | |||  || |||| |||| |||||||||||| ||||| || ||     
T  51764509 gtgttttatcatcaacttttgtaaatgacaagtctaacacctccagcttcggaactgcaaagttcattccaagtagcttcactcttgaacattcggatag 51764410  T
Q  103 gttcaaatgcttaatcttaccacatcttcctgaaacttgaaaaataccttcagatatgtattcgcaagtattcaaatcaagcagctgcaaattggggaaa 202  Q
    |||||||||| ||||||||  |||||| | | |||||| | | | ||||| |||||||   | ||||| ||| |||||||||||||||||||||||||||    
T  51764409 gttcaaatgcctaatcttagaacatctccttaaaacttcacagacacctttagatatgcgattgcaagaattaaaatcaagcagctgcaaattggggaaa 51764310  T
Q  203 aaggaagctaacattataatcatttcatcacgtaacgatgaatttctacccaaatagagagattttaattgagggtatacacca 286  Q
    | |||||| |||||||| ||  ||||||||| |||| ||| ||||  ||||| ||||||||| |||||||||||||||||||||    
T  51764309 atggaagcaaacattatgatgctttcatcacttaaccatgtattttcacccagatagagagactttaattgagggtatacacca 51764226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 3 - 286
Target Start/End: Complemental strand, 13470801 - 13470518
Alignment:
Q  3 gtgttttatcatcgacttttgtatatgacaagttcaacacctccagctggggaattacaatctttattctaagtcgcttcactcttggacatttggctat 102  Q
    ||||||||||||  || ||||||| ||||||||||||||||||||| | |||||  ||||  || |||| |||| |||||||| ||  ||| | |||||     
T  13470801 gtgttttatcattaacctttgtatttgacaagttcaacacctccagattgggaacaacaaagttcattccaagtagcttcacttttttacaataggctaa 13470702  T
Q  103 gttcaaatgcttaatcttaccacatcttcctgaaacttgaaaaataccttcagatatgtattcgcaagtattcaaatcaagcagctgcaaattggggaaa 202  Q
    |||||||||| ||||||||| |||| | | | |||||||| |||||||||  |||| |   | ||||  |||||||||||||||||||||||||||||||    
T  13470701 gttcaaatgcctaatcttacaacatatccttaaaacttgacaaataccttttgataagagattgcaacaattcaaatcaagcagctgcaaattggggaaa 13470602  T
Q  203 aaggaagctaacattataatcatttcatcacgtaacgatgaatttctacccaaatagagagattttaattgagggtatacacca 286  Q
      |||||| |||||||| ||   |||||||| |||| ||  |||| | |||||||||||||| |||||||||||||||||||||    
T  13470601 ttggaagcaaacattatgatgccttcatcacttaaccattgattttttcccaaatagagagactttaattgagggtatacacca 13470518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 174 - 278
Target Start/End: Complemental strand, 514623 - 514519
Alignment:
Q  174 tcaaatcaagcagctgcaaattggggaaaaaggaagctaacattataatcatttcatcacgtaacgatgaatttctacccaaatagagagattttaattg 273  Q
    |||||||||  ||||||||||| |||||||  ||||| ||||||||||   ||||||| | |||  |||||||   | ||||||||||||||||||||||    
T  514623 tcaaatcaattagctgcaaattcgggaaaattgaagcaaacattataaggttttcatctcttaagcatgaattgtgagccaaatagagagattttaattg 514524  T
Q  274 agggt 278  Q
    |||||    
T  514523 agggt 514519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 5e-35; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 3 - 286
Target Start/End: Original strand, 10614623 - 10614906
Alignment:
Q  3 gtgttttatcatcgacttttgtatatgacaagttcaacacctccagctggggaattacaatctttattctaagtcgcttcactcttggacatttggctat 102  Q
    ||||||||||||  || || |||| ||||||||||||||||||||| | |||||  ||||  || |||| |||| |||||||| ||  ||| | |||||     
T  10614623 gtgttttatcattaaccttcgtatttgacaagttcaacacctccagattgggaacaacaacgttcattccaagtagcttcacttttttacaataggctaa 10614722  T
Q  103 gttcaaatgcttaatcttaccacatcttcctgaaacttgaaaaataccttcagatatgtattcgcaagtattcaaatcaagcagctgcaaattggggaaa 202  Q
    |||||||||| ||||||||| |||| | | | |||||||| ||||||||||| ||| |   | ||||  ||||||||||||||| |||||||||||||||    
T  10614723 gttcaaatgcctaatcttacaacatatccttaaaacttgacaaataccttcatataagagattgcaacgattcaaatcaagcagttgcaaattggggaaa 10614822  T
Q  203 aaggaagctaacattataatcatttcatcacgtaacgatgaatttctacccaaatagagagattttaattgagggtatacacca 286  Q
      |||||| ||| |||||||   |||||| | |||| |   |||| | |||||||||||||| |||||||||||||||||||||    
T  10614823 ttggaagcaaactttataatgccttcatcgcttaaccactgattttttcccaaatagagagactttaattgagggtatacacca 10614906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 3 - 286
Target Start/End: Complemental strand, 15092220 - 15091937
Alignment:
Q  3 gtgttttatcatcgacttttgtatatgacaagttcaacacctccagctggggaattacaatctttattctaagtcgcttcactcttggacatttggctat 102  Q
    ||||||||||||  || ||||| | |||||| |||||||||||||||| ||||| | |||  || |||| | || | ||||| |||  ||||   | ||     
T  15092220 gtgttttatcattaacctttgtttctgacaaattcaacacctccagctcgggaactgcaaagttcattccatgtagtttcacacttaaacatccagttaa 15092121  T
Q  103 gttcaaatgcttaatcttaccacatcttcctgaaacttgaaaaataccttcagatatgtattcgcaagtattcaaatcaagcagctgcaaattggggaaa 202  Q
    ||||||||| |||| ||||  |||| | | | |||||||| ||||||||| ||||||||  | ||||  |  ||||||||| ||||  || |||||||||    
T  15092120 gttcaaatgtttaagcttataacatttccttaaaacttgagaaataccttgagatatgttatagcaatgacccaaatcaagtagctctaagttggggaaa 15092021  T
Q  203 aaggaagctaacattataatcatttcatcacgtaacgatgaatttctacccaaatagagagattttaattgagggtatacacca 286  Q
    | |||||| |  ||| | || |||||||||| ||||    ||||   | ||||||||||||| |||||||||||||||||||||    
T  15092020 atggaagcaagtattctgatgatttcatcacttaaccggtaattgtgagccaaatagagagactttaattgagggtatacacca 15091937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 320 - 374
Target Start/End: Complemental strand, 10169870 - 10169816
Alignment:
Q  320 ttttccattttgatctcactaagcgaaggacaatttcttacgagggaaaacaagg 374  Q
    ||||||||||||||||||||||| ||||||||||| || ||||| | ||||||||    
T  10169870 ttttccattttgatctcactaagtgaaggacaattcctaacgagtgcaaacaagg 10169816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 320 - 374
Target Start/End: Complemental strand, 10177395 - 10177341
Alignment:
Q  320 ttttccattttgatctcactaagcgaaggacaatttcttacgagggaaaacaagg 374  Q
    ||||||||||||||||||||||| ||||||||||| || ||||| | ||||||||    
T  10177395 ttttccattttgatctcactaagtgaaggacaattcctaacgagtgcaaacaagg 10177341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 354
Target Start/End: Complemental strand, 10167414 - 10167380
Alignment:
Q  320 ttttccattttgatctcactaagcgaaggacaatt 354  Q
    ||||||||||||||||||||||| |||||||||||    
T  10167414 ttttccattttgatctcactaagtgaaggacaatt 10167380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 325 - 387
Target Start/End: Complemental strand, 15091880 - 15091818
Alignment:
Q  325 cattttgatctcactaagcgaaggacaatttcttacgagggaaaacaaggctgattctgtgag 387  Q
    ||||||||| ||| ||||||||||||| |||||  |||| |||||||||| || |||||||||    
T  15091880 cattttgatttcaataagcgaaggacagtttctaccgagtgaaaacaaggttgtttctgtgag 15091818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 1e-32; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 3 - 286
Target Start/End: Complemental strand, 19468568 - 19468285
Alignment:
Q  3 gtgttttatcatcgacttttgtatatgacaagttcaacacctccagctggggaattacaatctttattctaagtcgcttcactcttggacatttggctat 102  Q
    |||||| |||||| || ||||||| |||||| |||||||||||||||| ||||| |||||  || | || |||| | |||||||||| ||| | |||||     
T  19468568 gtgtttcatcatcaacctttgtatctgacaacttcaacacctccagcttgggaactacaaagttcactccaagtagattcactcttgaacagtgggctaa 19468469  T
Q  103 gttcaaatgcttaatcttaccacatcttcctgaaacttgaaaaataccttcagatatgtattcgcaagtattcaaatcaagcagctgcaaattggggaaa 202  Q
    ||| |||||| |||| |||  ||| || | | |||||||| |||| ||||| |||||||  | ||| |  |||||||||||||||||||||||||| |||    
T  19468468 gtttaaatgcctaatattagaacacctccttaaaacttgacaaatgccttccgatatgtggttgcatgagttcaaatcaagcagctgcaaattgggaaaa 19468369  T
Q  203 aaggaagctaacattataatcatttcatcacgtaacgatgaatttctacccaaatagagagattttaattgagggtatacacca 286  Q
    | |||||| |||||||| ||  ||||||| | |||| |||||||   | |||| |||||| | |||||||||||| ||||||||    
T  19468368 atggaagcaaacattatgatgttttcatcgcttaaccatgaattctcagccaagtagagatactttaattgagggaatacacca 19468285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 305 - 384
Target Start/End: Complemental strand, 29658702 - 29658623
Alignment:
Q  305 ttcccaatagctgttttttccattttgatctcactaagcgaaggacaatttcttacgagggaaaacaaggctgattctgt 384  Q
    |||||||||| ||| | |||||||||||| |||||||| |||||||||||| | ||||| |||||||| |||||||||||    
T  29658702 ttcccaatagttgtgtattccattttgatgtcactaagtgaaggacaatttataacgagcgaaaacaaagctgattctgt 29658623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 305 - 384
Target Start/End: Complemental strand, 29691217 - 29691138
Alignment:
Q  305 ttcccaatagctgttttttccattttgatctcactaagcgaaggacaatttcttacgagggaaaacaaggctgattctgt 384  Q
    |||||||||| ||| | |||||||||||| |||||||| |||||||||||| | ||||| |||||||| |||||||||||    
T  29691217 ttcccaatagttgtgtattccattttgatgtcactaagtgaaggacaatttataacgagcgaaaacaaagctgattctgt 29691138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 305 - 384
Target Start/End: Complemental strand, 29718729 - 29718650
Alignment:
Q  305 ttcccaatagctgttttttccattttgatctcactaagcgaaggacaatttcttacgagggaaaacaaggctgattctgt 384  Q
    |||||||||| ||| | |||||||||||| |||||||| |||||||||||| | ||||| |||||||| |||||||||||    
T  29718729 ttcccaatagttgtgtattccattttgatgtcactaagtgaaggacaatttataacgagcgaaaacaaagctgattctgt 29718650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 298 - 390
Target Start/End: Original strand, 33160850 - 33160942
Alignment:
Q  298 actctttttcccaatagctgttttttccattttgatctcactaagcgaaggacaatttcttacgagggaaaacaaggctgattctgtgagcct 390  Q
    ||||| ||||||||||| |||   |||||||||||| |||||||| |||||||| ||| | || || |||||||| |||||||||||||||||    
T  33160850 actctctttcccaatagttgtgcattccattttgatgtcactaagtgaaggacagtttgtaacaagtgaaaacaatgctgattctgtgagcct 33160942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 320 - 387
Target Start/End: Complemental strand, 19468239 - 19468172
Alignment:
Q  320 ttttccattttgatctcactaagcgaaggacaatttcttacgagggaaaacaaggctgattctgtgag 387  Q
    ||||||||||||||||||||||| ||||||||||| || ||||| | |||||||| ||| | ||||||    
T  19468239 ttttccattttgatctcactaagtgaaggacaattcctaacgagtgtaaacaaggttgaatatgtgag 19468172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 304 - 384
Target Start/End: Original strand, 30827447 - 30827527
Alignment:
Q  304 tttcccaatagctgttttttccattttgatctcactaagcgaaggacaatttcttacgagggaaaacaaggctgattctgt 384  Q
    ||||||||||| ||| |   |||||||||| ||| |||| |||||||||||| | ||||| |||||||| |||||||||||    
T  30827447 tttcccaatagttgtgtgaaccattttgatgtcagtaagtgaaggacaatttgtaacgagcgaaaacaaagctgattctgt 30827527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 219
Target Start/End: Original strand, 9581276 - 9581317
Alignment:
Q  178 atcaagcagctgcaaattggggaaaaaggaagctaacattat 219  Q
    ||||||||||||||||||||||||||  ||||| ||||||||    
T  9581276 atcaagcagctgcaaattggggaaaattgaagcaaacattat 9581317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 219
Target Start/End: Original strand, 9586844 - 9586885
Alignment:
Q  178 atcaagcagctgcaaattggggaaaaaggaagctaacattat 219  Q
    ||||||||||||||||||||||||||  ||||| ||||||||    
T  9586844 atcaagcagctgcaaattggggaaaattgaagcaaacattat 9586885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 103 - 286
Target Start/End: Complemental strand, 21834347 - 21834164
Alignment:
Q  103 gttcaaatgcttaatcttaccacatcttcctgaaacttgaaaaataccttcagatatgtattcgcaagtattcaaatcaagcagctgcaaattggggaaa 202  Q
    |||||||||||||||||||| |||| | | | ||||||   |||||||||| ||||| | |  | ||| | |||||||||||||||| ||||||||||||    
T  21834347 gttcaaatgcttaatcttacaacatttccttaaaacttcgcaaataccttctgatatctgtgtggaagaagtcaaatcaagcagctgtaaattggggaaa 21834248  T
Q  203 aaggaagctaacattataatcatttcatcacgtaacgatgaatttctacccaaatagagagattttaattgagggtatacacca 286  Q
    |  ||||| |||||||| ||  ||||||||  |||| ||||||| |  |||||| ||||||| |||||||||||||| ||||||    
T  21834247 attgaagcaaacattatgattctttcatcatttaaccatgaattgcggcccaaaaagagagactttaattgagggtacacacca 21834164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 3 - 159
Target Start/End: Complemental strand, 53761841 - 53761685
Alignment:
Q  3 gtgttttatcatcgacttttgtatatgacaagttcaacacctccagctggggaattacaatctttattctaagtcgcttcactcttggacatttggctat 102  Q
    |||||||||| |  ||||| ||| |||||||||||||| |||| |||| ||||| |||||  || |||| || | |||||||||||| ||| | |||||     
T  53761841 gtgttttatcgttaactttcgtaaatgacaagttcaacgcctctagcttgggaactacaaagttcattccaattagcttcactcttgaacactcggctaa 53761742  T
Q  103 gttcaaatgcttaatcttaccacatcttcctgaaacttgaaaaataccttcagatat 159  Q
    |||||||||| |||| |||| |||||| | | |||||||| ||||||||| ||||||    
T  53761741 gttcaaatgcctaatgttacaacatctccttaaaacttgacaaatacctttagatat 53761685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 3 - 217
Target Start/End: Complemental strand, 8187160 - 8186943
Alignment:
Q  3 gtgttttatcatcgacttttgtatatgacaagttcaacacctccagctggggaattacaatctttattctaagtcgcttcactcttggacatttggctat 102  Q
    ||||||||||||| ||| |||||| ||||||||||||||||||||| | || |||| |||  || ||||      ||   ||||||||||| | |||||     
T  8187160 gtgttttatcatcaactcttgtatgtgacaagttcaacacctccagtttggaaatttcaaagttcattccggagagcccaactcttggacagtaggctaa 8187061  T
Q  103 gttcaaatgcttaatcttaccacatcttcctgaaacttgaaaaataccttc---agatatgtattcgcaagtattcaaatcaagcagctgcaaattgggg 199  Q
    |||||||| | |||||| || ||||||     |||||||| ||||||||||   ||||||||  | ||||  | |||||||||||| |||||||||||||    
T  8187060 gttcaaatccctaatctcacaacatctcttcaaaacttgacaaataccttcttcagatatgtcatagcaatgactcaaatcaagcaactgcaaattgggg 8186961  T
Q  200 aaaaaggaagctaacatt 217  Q
    || ||||||| |||||||    
T  8186960 aataaggaagataacatt 8186943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 322 - 397
Target Start/End: Complemental strand, 3438381 - 3438306
Alignment:
Q  322 ttccattttgatctcactaagcgaaggacaatttcttacgagggaaaacaaggctgattctgtgagccttgaacaa 397  Q
    ||||||||| ||||||||||| ||||||||||| || | ||| ||||| |||||| ||| ||||||| | ||||||    
T  3438381 ttccatttttatctcactaagtgaaggacaattactaatgagtgaaaataaggctaattttgtgagcatcgaacaa 3438306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 322 - 376
Target Start/End: Original strand, 547283 - 547337
Alignment:
Q  322 ttccattttgatctcactaagcgaaggacaatttcttacgagggaaaacaaggct 376  Q
    ||||||||||||||||||||| |||| |||||| || ||||| | ||||||||||    
T  547283 ttccattttgatctcactaagtgaagcacaattactaacgagtgcaaacaaggct 547337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 176 - 222
Target Start/End: Original strand, 570737 - 570783
Alignment:
Q  176 aaatcaagcagctgcaaattggggaaaaaggaagctaacattataat 222  Q
    |||||||| || |||||||||||||||| |||||| |||||||||||    
T  570737 aaatcaagtagttgcaaattggggaaaatggaagcaaacattataat 570783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 98 - 203
Target Start/End: Complemental strand, 3438540 - 3438432
Alignment:
Q  98 gctatgttcaaatgcttaatcttaccacatcttcctgaaacttgaaaaataccttc---agatatgtattcgcaagtattcaaatcaagcagctgcaaat 194  Q
    |||| |||||||||  ||||||||| |||||| | | ||||||||| || ||||||   ||||||||| |||||     ||| |||||||||||||||||    
T  3438540 gctaagttcaaatgtctaatcttacaacatctccttaaaacttgaataacaccttcgtcagatatgtagtcgcattctctcacatcaagcagctgcaaat 3438441  T
Q  195 tggggaaaa 203  Q
    |||||||||    
T  3438440 tggggaaaa 3438432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 357
Target Start/End: Complemental strand, 10634188 - 10634131
Alignment:
Q  300 tctttttcccaatagctgttttttccattttgatctcactaagcgaaggacaatttct 357  Q
    |||||||||||||||  ||   ||||||||||||||||||||| |||||||| |||||    
T  10634188 tctttttcccaatagacgtgcattccattttgatctcactaagtgaaggacagtttct 10634131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 640945 - 640989
Alignment:
Q  3 gtgttttatcatcgacttttgtatatgacaagttcaacacctcca 47  Q
    |||||| |||||| || ||||||| ||||||||||||||||||||    
T  640945 gtgtttcatcatcaacgtttgtatctgacaagttcaacacctcca 640989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 95 - 202
Target Start/End: Complemental strand, 1524463 - 1524353
Alignment:
Q  95 ttggctatgttcaaatgcttaatcttaccacatcttcctgaaacttgaaaaataccttc---agatatgtattcgcaagtattcaaatcaagcagctgca 191  Q
    ||||||| |||||||||| |||  |||| |||||| | | |||| |||| |||||||||   ||||| ||||  ||||  | | ||||||||||||||||    
T  1524463 ttggctaagttcaaatgcctaagtttacaacatctccttaaaacctgaagaataccttcttcagatacgtatgagcaataacttaaatcaagcagctgca 1524364  T
Q  192 aattggggaaa 202  Q
    |||||||||||    
T  1524363 aattggggaaa 1524353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 11 - 129
Target Start/End: Complemental strand, 20478143 - 20478025
Alignment:
Q  11 tcatcgacttttgtatatgacaagttcaacacctccagctggggaattacaatctttattctaagtcgcttcactcttggacatttggctatgttcaaat 110  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||||||  ||||||| |||| ||||| ||||| |||||   |||| ||||||||    
T  20478143 tcatcaacatttgtatatgacaagttcaacacctccagctggggaattacaacgtttattccaagtagcttcgctcttcgacatccagctaagttcaaat 20478044  T
Q  111 gcttaatcttaccacatct 129  Q
    || | | ||||| ||||||    
T  20478043 gccttaacttacaacatct 20478025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 297 - 387
Target Start/End: Complemental strand, 20477839 - 20477749
Alignment:
Q  297 cactctttttcccaatagctgttttttccattttgatctcactaagcgaaggacaatttcttacgagggaaaacaaggctgattctgtgag 387  Q
    |||||| |||||| |||| ||| | ||||||||||||||||| ||| |||||||| ||||| || || ||| |||||||| ||||||||||    
T  20477839 cactctctttcccgatagatgtgtattccattttgatctcacaaagtgaaggacagtttctaactagtgaatacaaggctaattctgtgag 20477749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 174 - 217
Target Start/End: Complemental strand, 41901433 - 41901390
Alignment:
Q  174 tcaaatcaagcagctgcaaattggggaaaaaggaagctaacatt 217  Q
    |||||||||||||||||||||||||||||| |||||| ||||||    
T  41901433 tcaaatcaagcagctgcaaattggggaaaatggaagcgaacatt 41901390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 48
Target Start/End: Complemental strand, 41901597 - 41901559
Alignment:
Q  10 atcatcgacttttgtatatgacaagttcaacacctccag 48  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  41901597 atcatcaacttttgtatatgacaagttcaacacctccag 41901559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 41889623 - 41889579
Alignment:
Q  3 gtgttttatcatcgacttttgtatatgacaagttcaacacctcca 47  Q
    |||||| |||||| |||||||||||||| ||||||||||||||||    
T  41889623 gtgtttcatcatcaacttttgtatatgataagttcaacacctcca 41889579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 298 - 397
Target Start/End: Original strand, 32267818 - 32267917
Alignment:
Q  298 actctttttcccaatagctgttttttccattttgatctcactaagcgaaggacaatttcttacgagggaaaacaaggctgattctgtgagccttgaacaa 397  Q
    ||||||||||||||||  ||| | ||||||||||||||||||||| ||||| || ||  | | |||   ||| |||||||||||||| ||| ||||||||    
T  32267818 actctttttcccaatacatgtgtgttccattttgatctcactaagtgaagggcagttcttaaggagaacaaagaaggctgattctgtaagcattgaacaa 32267917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 219
Target Start/End: Complemental strand, 41889449 - 41889404
Alignment:
Q  174 tcaaatcaagcagctgcaaattggggaaaaaggaagctaacattat 219  Q
    |||||||||| ||||||||||| ||||||| |||||| ||||||||    
T  41889449 tcaaatcaagtagctgcaaattagggaaaatggaagcaaacattat 41889404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 176 - 277
Target Start/End: Complemental strand, 17627952 - 17627851
Alignment:
Q  176 aaatcaagcagctgcaaattggggaaaaaggaagctaacattataatcatttcatcacgtaacgatgaatttctacccaaatagagagattttaattgag 275  Q
    ||||||||||| |||||||||||||||| |||||| |||||| | ||  ||||||| | || | |||||||   | ||||||||||||||||||||||||    
T  17627952 aaatcaagcagttgcaaattggggaaaatggaagcaaacattttgatgttttcatcgcatagcaatgaattgaaagccaaatagagagattttaattgag 17627853  T
Q  276 gg 277  Q
    ||    
T  17627852 gg 17627851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 322 - 381
Target Start/End: Complemental strand, 17627788 - 17627729
Alignment:
Q  322 ttccattttgatctcactaagcgaaggacaatttcttacgagggaaaacaaggctgattc 381  Q
    ||||||||| |||||| |||| |||||||| || || ||||| |||||||||||||||||    
T  17627788 ttccatttttatctcattaagtgaaggacatttactaacgagtgaaaacaaggctgattc 17627729  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 48
Target Start/End: Complemental strand, 18315335 - 18315297
Alignment:
Q  10 atcatcgacttttgtatatgacaagttcaacacctccag 48  Q
    |||||| |||||||||| |||||||||||||||||||||    
T  18315335 atcatcaacttttgtatgtgacaagttcaacacctccag 18315297  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 34936232 - 34936190
Alignment:
Q  3 gtgttttatcatcgacttttgtatatgacaagttcaacacctc 45  Q
    ||||||||||||| ||| ||||||||||||||| |||||||||    
T  34936232 gtgttttatcatcaactcttgtatatgacaagtccaacacctc 34936190  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 47
Target Start/End: Original strand, 27922545 - 27922582
Alignment:
Q  10 atcatcgacttttgtatatgacaagttcaacacctcca 47  Q
    |||||| || ||||||||||||||||||||||||||||    
T  27922545 atcatcaacatttgtatatgacaagttcaacacctcca 27922582  T

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