View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10104A_low_48 (Length: 407)
Name: NF10104A_low_48
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104A_low_48 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 165; Significance: 4e-88; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 182 - 401
Target Start/End: Original strand, 27915071 - 27915288
Alignment:
| Q |
182 |
tagtaacatatactgtataattcaataaaatggttagctatataggggctggagttgacatacatttctattcactcataatttatcaatcattattttc |
281 |
Q |
| |
|
|||||||||||| | ||||||||||||||| ||||| |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27915071 |
tagtaacatatattttataattcaataaaacggttaactatataggggccggaattgacatacatttctattcactcataatttatcaatcattattttc |
27915170 |
T |
|
| Q |
282 |
cttctggttgccatttttctcgatcttacaatattgtgggaacactgacaaagtgcaccataaaccacaaaaccagttaccgacatatactagtactcag |
381 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||| |||||||||| |
|
|
| T |
27915171 |
cttctggttgccattttcctcgatcttacaatattgtgggaacactgacaaagtgcaccatgaaccac--aaccatttaccgacatatgttagtactcag |
27915268 |
T |
|
| Q |
382 |
atttttcttaataattttag |
401 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
27915269 |
atttttcttaataattttag |
27915288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 27914651 - 27914817
Alignment:
| Q |
1 |
aatatacctggatcgtgcgaagaatctagtatatatatctgcaagtggccaatcaagtactctttcatgcaagtatccatgaccaatgtattaattattt |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||| ||||||||||||||||||||||||| |
|
|
| T |
27914651 |
aatatagctggatcgtgcgaagaatctagtatatatatctgcaagtagccaatcacgtactctttcttgcaagtttccatgaccaatgtattaattattt |
27914750 |
T |
|
| Q |
101 |
aagtacgtaatacgtatgttcttgtcctccgacccctactcaataaacagacaatgaaagtgtgttt |
167 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
27914751 |
aagtacgtaatacgtatgttcttgtcctcagacccctactctctaaacagacaataaaagtgtgttt |
27914817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 180 - 356
Target Start/End: Original strand, 27909681 - 27909857
Alignment:
| Q |
180 |
actagtaacatatactgtataattcaataaaatggttagctatataggggctggagttgacatacatttctattcactcataatttatcaatcattattt |
279 |
Q |
| |
|
|||||||||||||| | ||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
27909681 |
actagtaacatatattttataattcaataaaatggttaactatataggggccggaattgacatacatttctattcactcataatttatcaatcattatat |
27909780 |
T |
|
| Q |
280 |
tccttctggttgccatttttctcgatcttacaatattgtgggaacactgacaaagtgcaccataaaccacaaaacca |
356 |
Q |
| |
|
||||||| |||||||||| || ||||||||||||| |||||||||| ||||||||||| ||| ||||||||||||| |
|
|
| T |
27909781 |
cccttctgattgccattttccttgatcttacaatatcgtgggaacacagacaaagtgcatcatgaaccacaaaacca |
27909857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 27907920 - 27907964
Alignment:
| Q |
1 |
aatatacctggatcgtgcgaagaatctagtatatatatctgcaag |
45 |
Q |
| |
|
|||||| ||| ||||||||||| ||||||||| |||||||||||| |
|
|
| T |
27907920 |
aatatagctgaatcgtgcgaaggatctagtatgtatatctgcaag |
27907964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University