View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10104A_low_5 (Length: 566)

Name: NF10104A_low_5
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10104A_low_5
NF10104A_low_5
[»] chr7 (9 HSPs)
chr7 (13-497)||(3685958-3686449)
chr7 (14-213)||(3693725-3693925)
chr7 (32-220)||(3679213-3679409)
chr7 (14-208)||(3675532-3675716)
chr7 (304-395)||(3703297-3703388)
chr7 (314-379)||(3675811-3675877)
chr7 (409-483)||(3687028-3687100)
chr7 (514-544)||(3686472-3686502)
chr7 (226-294)||(34676634-34676702)
[»] chr3 (1 HSPs)
chr3 (425-484)||(41979687-41979749)
[»] chr1 (1 HSPs)
chr1 (428-480)||(4432410-4432462)


Alignment Details
Target: chr7 (Bit Score: 417; Significance: 0; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 13 - 497
Target Start/End: Original strand, 3685958 - 3686449
Alignment:
Q  13 tcgaagaatatagatcacgaacgcatcgcgaactgatgtggcagtaagtgattggttcttataacacatacacactgtgatttccgctcattcatgaact 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  3685958 tcgaagaatatagatcacgaacgcatcgcgaactgatgtggcagtaagtgattggttcttttaacacatacacactgtgatttccgctcattcatgaact 3686057  T
Q  113 atacacaacttcttcctttataattaccacacgtatcgattcgggaagatcgttatgaggtgtgttcttgataaatagcagtactagaaataaaatatga 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  3686058 atacacaacttcttcctttataattaccacacgtatcgattcgggaagatcgttatgaggtgtgttcttgataaatagcagtactagaaaaaaaatatga 3686157  T
Q  213 cagttatgttagggagaaaagaaaaaagaaagtggttacttgctagttgctgagtggttttgtgagggagtgaccaagctctagatatcgtcatttctgc 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||    
T  3686158 cagttatgttagggagaaaagaaaaaagaaagtggttacttgctagttgccgagtggttttgtgagggagggaccaagctctagatatcgtcatttctgc 3686257  T
Q  313 taaggcatctagatatggaatttgtttgaagtaacttctaactaagacatgaaacgatgataataataagatagacatgaaac-gatg------atatat 405  Q
     |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||      | | |     
T  3686258 caaggcatcaagatatggaatttgtttgaagtaacttctaactaagacatgaaacgatgataataataagatagacatgaaacagatgtaatgaacaaaa 3686357  T
Q  406 ggcataaaccatatatagtactaacatagtaagaacaatttagaaaacaaaagcacaagatccctttcaaatgatgatacaatgaagaagaa 497  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  3686358 ggcataaaccatatataatactaacatagtaagaacaatttagaaaacaaaagcacaagatccctttcaaatgatgatacaatgaaaaagaa 3686449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 14 - 213
Target Start/End: Original strand, 3693725 - 3693925
Alignment:
Q  14 cgaagaatatagatcacgaacgcatcgcgaactgatgtggcagtaagtgattggtt-cttataacacatacacactgtgatttccgctcattcatgaact 112  Q
    |||||||||| |||||  |||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||     
T  3693725 cgaagaatattgatcaataacgcatcacgaactgatttggcagtaagtgattggtttcttataacacatacacactgtgatttccgctcattcctgaacc 3693824  T
Q  113 atacacaacttcttcctttataattaccacacgtatcgattcgggaagatcgttatgaggtgtgttcttgataaatagcagtactagaaataaaatatga 212  Q
    ||||||  ||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||| |||||||| | ||||||||||||||||||||||    
T  3693825 atacactgcttcttcctttataattacaacacgtatcgattcgggaagatcatgatgaggtgtgtttttgataaacaacagtactagaaataaaatatga 3693924  T
Q  213 c 213  Q
    |    
T  3693925 c 3693925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 32 - 220
Target Start/End: Original strand, 3679213 - 3679409
Alignment:
Q  32 aacgcatcgcgaactgatgtggcagtaagtgattggtt-cttataacacatacacactgtgatttccgctcattcatgaactatacacaacttcttcctt 130  Q
    |||||||| |||| |||| |||||| |||||||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||| |||    
T  3679213 aacgcatcacgaattgatttggcagcaagtgattggtttcttataacacatacacgctgtgatttccgctcattcctgaactatacactacttctt-ctt 3679311  T
Q  131 tataattaccac----ac---gtatcgattcgggaagatcgttatgaggtgtgttcttgataaatagcagtactagaaat-aaaatatgacagttatg 220  Q
     |||||||| ||    ||   ||||||||||||||||||||| ||||||  ||||||||||||||||||||||||||||| |||||||||||||||||    
T  3679312 aataattacaacgtgtacggtgtatcgattcgggaagatcgtgatgaggcatgttcttgataaatagcagtactagaaatgaaaatatgacagttatg 3679409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 14 - 208
Target Start/End: Original strand, 3675532 - 3675716
Alignment:
Q  14 cgaagaatatagatcacgaacgcatcgcgaactgatgtggcagtaagtgattggttcttataacacatacacactgtgatttccgctcattcatgaacta 113  Q
    |||||||||||||||||||||||||| | |||||||||||   |||||          |||||||| |||   |||| ||||||||||||||  ||||||    
T  3675532 cgaagaatatagatcacgaacgcatcacaaactgatgtggttataagt----------tataacacttacgtgctgtcatttccgctcattccagaacta 3675621  T
Q  114 tacacaacttcttcctttataattaccacacgtatcgattcgggaagatcgttatgaggtgtgttcttgataaatagcagtactagaaataaaat 208  Q
    |||||  ||||||||||||||||||| ||||| ||||||||||||||||| |  |||| |||||||||||||||||| |||||||||||||||||    
T  3675622 tacactgcttcttcctttataattacaacacgaatcgattcgggaagatcatggtgagatgtgttcttgataaatagtagtactagaaataaaat 3675716  T

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Target: chr7; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 304 - 395
Target Start/End: Original strand, 3703297 - 3703388
Alignment:
Q  304 catttctgctaaggcatctagatatggaatttgtttgaagtaacttctaactaagacatgaaacgatgataataataagatagacatgaaac 395  Q
    ||||| |||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||| |||||||| |||||||||| ||||||||    
T  3703297 catttttgctaaggcatctagatatggaatttatttgaagtagcttgtaactaagacatgaaatgatgataacaataagataggcatgaaac 3703388  T

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Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 314 - 379
Target Start/End: Original strand, 3675811 - 3675877
Alignment:
Q  314 aaggcatctagatatggaatttgtttgaagtaa-cttctaactaagacatgaaacgatgataataat 379  Q
    ||||||||| |||||||||||| |||||||||| |||||||||||||||||||| ||||| ||||||    
T  3675811 aaggcatcttgatatggaatttatttgaagtaagcttctaactaagacatgaaatgatgacaataat 3675877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 409 - 483
Target Start/End: Complemental strand, 3687100 - 3687028
Alignment:
Q  409 ataaaccatatatagtactaacatagtaagaacaattt-agaaaacaaaagcacaagatccctttcaaatgatgat 483  Q
    ||||||||||||||   ||||||||||||||||||||| | |||| ||||||||| ||||||||||||||||||||    
T  3687100 ataaaccatatata---ctaacatagtaagaacaattttaaaaaagaaaagcacatgatccctttcaaatgatgat 3687028  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 514 - 544
Target Start/End: Original strand, 3686472 - 3686502
Alignment:
Q  514 caactttgttttacgatcttgctatccccct 544  Q
    |||||||||||||||||||||||||||||||    
T  3686472 caactttgttttacgatcttgctatccccct 3686502  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 226 - 294
Target Start/End: Original strand, 34676634 - 34676702
Alignment:
Q  226 gagaaaagaaaaaagaaagtggttacttgctagttgctgagtggttttgtgagggagtgaccaagctct 294  Q
    ||||||||||||  ||||||||||| | | |||||  ||||||||| |||||||||| ||| |||||||    
T  34676634 gagaaaagaaaagggaaagtggttattgggtagttcttgagtggttatgtgagggagagacaaagctct 34676702  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 425 - 484
Target Start/End: Original strand, 41979687 - 41979749
Alignment:
Q  425 actaacatagtaagaacaatttagaaaacaaaagcacaagatccct---ttcaaatgatgata 484  Q
    |||||||||||||||||||||||  ||||||| ||||  |||||||   ||||||||||||||    
T  41979687 actaacatagtaagaacaatttaataaacaaatgcacctgatcccttcattcaaatgatgata 41979749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 428 - 480
Target Start/End: Original strand, 4432410 - 4432462
Alignment:
Q  428 aacatagtaagaacaatttagaaaacaaaagcacaagatccctttcaaatgat 480  Q
    |||||||||||||||||||||||| | ||  |||| |||||| ||||||||||    
T  4432410 aacatagtaagaacaatttagaaagccaattcacatgatccccttcaaatgat 4432462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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