View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10104A_low_50 (Length: 405)
Name: NF10104A_low_50
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104A_low_50 |
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Alignment Details
Target: chr5 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 6 - 392
Target Start/End: Complemental strand, 2361139 - 2360765
Alignment:
| Q |
6 |
aaaatgaaattcctcttccgtcattaccgttaccggcaaactccggtgaagaatctcaatctcaatcacaatctcaaaacaataataataagagtttatt |
105 |
Q |
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| T |
2361139 |
aaaatgaaattcctctttcgtcattaccgttaccggcaaactccggtgaagaatctcaatctcaa------------aacaataataataagagtttatt |
2361052 |
T |
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| Q |
106 |
ttctcctacttcagttcttcaatgttgttcatcttctgaagaagtagctgaatctgaatcaatgttttcaattccaagtgatatacagtttgattttcaa |
205 |
Q |
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| T |
2361051 |
ttctcctacttcagttcttcaatgttgttcatcttctgaagaagtagctgaatctgaatcaatgttttcaattccaagtgatatacagtttgattttcaa |
2360952 |
T |
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| Q |
206 |
gattcttcacaagcaaatgatgcattttacaacttcaatggattctcagagagcatgttctatggtgatattggttttgagtatttcgattttgggttag |
305 |
Q |
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| T |
2360951 |
gattcttcacaagcaaatgatgcattttacaacttcaatggattctcagagagcatgttatatggtgatattggttttgagtatttcgattttgggttag |
2360852 |
T |
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| Q |
306 |
aaagcttgcagacacataaggatgaagacttttttcaagatattgatgatttatttgcttcagatactactgttcttgctctttaat |
392 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2360851 |
aaagcttgcagacacataaggatgaagacttttttcaagatattgatgatttatttgcttcagatactactgttcttgctctttaat |
2360765 |
T |
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