View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10104A_low_52 (Length: 401)
Name: NF10104A_low_52
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF10104A_low_52 |
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Alignment Details
Target: chr5 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 12 - 395
Target Start/End: Original strand, 7733620 - 7734004
Alignment:
Q |
12 |
atgaaacatcatgtacaacacctcaatgactaaaccatagatttcattcttcatcgatcacttgagcccaatattgaagaatcatcgatcgaaacagacc |
111 |
Q |
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T |
7733620 |
atgaaacatcatgtacaacgcttcaatgactaaaccatagatttcattcttcatcgatcacttgagcccaatattgaagaatcatcgatcgaaacagacc |
7733719 |
T |
 |
Q |
112 |
ttcactagcttccagacgaattcttaccaacgcctagaaaggcatcattcattacaaaagcaatgtacgccatttctattatttcaatacctcacactct |
211 |
Q |
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T |
7733720 |
ttcactaacttccagacgacttcttaccaatgcctagaaaggcctcattcattacaaaagcaatgtacaccatttctattatttcaatgcctcacactct |
7733819 |
T |
 |
Q |
212 |
ttgttttcatattgacttgagtatccatcttagttttattttggagaggatataatttagtttttggttattaactttgtgtttataaaatattataa-n |
310 |
Q |
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T |
7733820 |
ttgttttcatattgacttgagtatccatcttagttttattttggagcggatgtaatttagtttttggttattaactttgtgtttataacatattataatt |
7733919 |
T |
 |
Q |
311 |
nnnnnnaaacaatacaagcggaaagacggacacctgagtatctatctttccgctctttttattgcgtcaatgcgtataaattttc |
395 |
Q |
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T |
7733920 |
ttttttaaacaatacaagcggaaagacggacacctgaatatccatctttctgctctttttattgcgtcaatgcgtataaattttc |
7734004 |
T |
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 359 - 392
Target Start/End: Complemental strand, 48458269 - 48458236
Alignment:
Q |
359 |
tccgctctttttattgcgtcaatgcgtataaatt |
392 |
Q |
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T |
48458269 |
tccgctctttttattgcgttaatgcgtataaatt |
48458236 |
T |
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
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