View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10104A_low_52 (Length: 401)

Name: NF10104A_low_52
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10104A_low_52
NF10104A_low_52
[»] chr5 (1 HSPs)
chr5 (12-395)||(7733620-7734004)
[»] chr4 (1 HSPs)
chr4 (359-392)||(48458236-48458269)


Alignment Details
Target: chr5 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 12 - 395
Target Start/End: Original strand, 7733620 - 7734004
Alignment:
12 atgaaacatcatgtacaacacctcaatgactaaaccatagatttcattcttcatcgatcacttgagcccaatattgaagaatcatcgatcgaaacagacc 111  Q
    ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
7733620 atgaaacatcatgtacaacgcttcaatgactaaaccatagatttcattcttcatcgatcacttgagcccaatattgaagaatcatcgatcgaaacagacc 7733719  T
112 ttcactagcttccagacgaattcttaccaacgcctagaaaggcatcattcattacaaaagcaatgtacgccatttctattatttcaatacctcacactct 211  Q
    ||||||| ||||||||||| |||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||    
7733720 ttcactaacttccagacgacttcttaccaatgcctagaaaggcctcattcattacaaaagcaatgtacaccatttctattatttcaatgcctcacactct 7733819  T
212 ttgttttcatattgacttgagtatccatcttagttttattttggagaggatataatttagtttttggttattaactttgtgtttataaaatattataa-n 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |||||||||      
7733820 ttgttttcatattgacttgagtatccatcttagttttattttggagcggatgtaatttagtttttggttattaactttgtgtttataacatattataatt 7733919  T
311 nnnnnnaaacaatacaagcggaaagacggacacctgagtatctatctttccgctctttttattgcgtcaatgcgtataaattttc 395  Q
          ||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||||||||||||||||||||||    
7733920 ttttttaaacaatacaagcggaaagacggacacctgaatatccatctttctgctctttttattgcgtcaatgcgtataaattttc 7734004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 359 - 392
Target Start/End: Complemental strand, 48458269 - 48458236
Alignment:
359 tccgctctttttattgcgtcaatgcgtataaatt 392  Q
    ||||||||||||||||||| ||||||||||||||    
48458269 tccgctctttttattgcgttaatgcgtataaatt 48458236  T

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