View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10104A_low_53 (Length: 399)
Name: NF10104A_low_53
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104A_low_53 |
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Alignment Details
Target: chr8 (Bit Score: 305; Significance: 1e-171; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 7 - 384
Target Start/End: Original strand, 37020000 - 37020390
Alignment:
| Q |
7 |
ctatgtagaagggataatatatatccttcattaataaattatgaacttgaatgtcttgtgaatcctgtgttctctaaatgtagcttggagatatannnnn |
106 |
Q |
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| T |
37020000 |
ctatatagaaaggataatatatttccttcattaataaattatgaacttgaatgtcttgtgaatcctgtgttctctaaatgtagtttggagatatattttt |
37020099 |
T |
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| Q |
107 |
nnaaataatttgggcctcttaaatttcattacttatttt--gaccttgttaggagatgcttatgtccgtcttatgttttataaagtgatttgaatcaatt |
204 |
Q |
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| T |
37020100 |
taaaataatttgggcctcttaaatttcattacttattttatgaccttgttaggagatgcttatgtccgtcttatgttttataaagtgatttgaatcaatt |
37020199 |
T |
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| Q |
205 |
ttcaaatgtatgattcaataattgcatgtatgaagaagtaacagggtgaacaatttcatcagaaagagaattgttttacaatatgttgttgg-------- |
296 |
Q |
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| T |
37020200 |
ttcaaatgtatgattcaataattgcatgtatgaagaagtaacagggtgaacaatttcatcagaaagagaattgttttacaatatgttgttggctctacta |
37020299 |
T |
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| Q |
297 |
---cgggtgtggacataacatatgaagtttattgtgtcttagttttggttgattcagcatgccaacaatgcatctaagggtacctttttat |
384 |
Q |
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| T |
37020300 |
cttcgggtgtggacataacatatgaagtttattgtgtcttagttttggttgattcagcatgccaacaatgcatctaagggtacctttttat |
37020390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 37041929 - 37041991
Alignment:
| Q |
8 |
tatgtagaagggataatatatatccttcattaataaattatgaacttgaatgtcttgtgaatc |
70 |
Q |
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| T |
37041929 |
tatgtagaagggataatatatatccttcattaataaataatgaacttgcatgttttgtgaatc |
37041991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 150 - 243
Target Start/End: Original strand, 37025946 - 37026040
Alignment:
| Q |
150 |
ttgttaggagatgcttatgtccgtcttatgttttataaagtgatttgaatcaattttcaaat-gtatgattcaataattgcatgtatgaagaagt |
243 |
Q |
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| T |
37025946 |
ttgttagaagttgcttctctccgtcttatgttttatcaggtgttttgaatcaattttcaaatattttgattcagtaattgcatgcatgaagaagt |
37026040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 146 - 243
Target Start/End: Original strand, 37042080 - 37042178
Alignment:
| Q |
146 |
gaccttgttaggagatgcttatgtccgtcttatgttttataaagtgatttgaatcaattttcaaat-gtatgattcaataattgcatgtatgaagaagt |
243 |
Q |
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| T |
37042080 |
gactttgttagaagttgcttctctccgtcttatgttttatcaggtgttttgaatcaattttcaaatattttgattcagtaattgcatgcatgaagaagt |
37042178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 347
Target Start/End: Original strand, 37026144 - 37026182
Alignment:
| Q |
309 |
taacatatgaagtttattgtgtcttagttttggttgatt |
347 |
Q |
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| T |
37026144 |
taacatataaagtttattatgtcttagttttggttgatt |
37026182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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