View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10104A_low_55 (Length: 395)
Name: NF10104A_low_55
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104A_low_55 |
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Alignment Details
Target: chr2 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 7 - 383
Target Start/End: Original strand, 32898615 - 32898991
Alignment:
| Q |
7 |
cagtttaccttccacctcttcttgattcatctccctacactgccgctagcaccgcctcattcaacggtggtcaaatgtgtaactacaacagctccaacaa |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32898615 |
cagtttaccttccacctcttcttgattcatctccctacaccgccgctagcaccgcctcattcaacggtggtcaaatgtgtaactacaacagctccaacaa |
32898714 |
T |
|
| Q |
107 |
caacactgatctaaaggagcacgtgtcctgtttctccacaacatctacaacatcaaatgttgtctctgttcacaacagcttcaacggcaacaacaatgga |
206 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||| |
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| T |
32898715 |
caacactgatctaaaggagcacgtgtcctgtttctccacaacatctacaacatcaaatgttgtctctgttcacaacaacttcaacagcaacagcaatgga |
32898814 |
T |
|
| Q |
207 |
agttttgatctcgtttcaccttctatgaatgcaacaatggatccttttgcaaggtttcagaggaatgtcggtgtttctgcttttcctagcttgagatcac |
306 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32898815 |
agttttgatcttgtttcaccttctatgaatgcaacaatggatccttttgcaaggtttcagaggaatgtcggtgtttctgcttttcctagcttgagatcac |
32898914 |
T |
|
| Q |
307 |
tacaagataatcttcagcttcctttctttttctcctcggcggccgcggcgcagccttttcccggtggtggtgatatt |
383 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
32898915 |
tacaagataatcttcagcttcctttctttttctcctcggccgccgcggcgcagccttttcccggtggtggtgatatt |
32898991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 9 - 259
Target Start/End: Original strand, 17414958 - 17415196
Alignment:
| Q |
9 |
gtttaccttccacctcttcttgattcatctccctacactgccgctagcaccgcctcattcaacggtggtcaaatgtgtaactacaacagctccaacaaca |
108 |
Q |
| |
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| T |
17414958 |
gtttatcttccacctcttcttgattcatctccttacaccgccgctagcatcgccacattcaacggcgaccaaatgtgtaactccaac------------a |
17415045 |
T |
|
| Q |
109 |
acactgatctaaaggagcacgtgtcctgtttctccacaacatctacaacatcaaatgttgtctctgttcacaacagcttcaacggcaacaacaatggaag |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||| ||||||||||||||| |
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| T |
17415046 |
acactgatctaaaggagcacgtgtcctgtttctccacaacatctacaacatcaaatgttgtcgctgcccacaacaacttcagtaacaacaacaatggaag |
17415145 |
T |
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| Q |
209 |
ttttgatctcgtttcaccttctatgaatgcaacaatggatccttttgcaag |
259 |
Q |
| |
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|||||||| ||||| |||||||||||||| ||||| |||||||||||||| |
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| T |
17415146 |
ctttgatcttgtttctccttctatgaatgctacaattgatccttttgcaag |
17415196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 118; Significance: 4e-60; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 9 - 259
Target Start/End: Complemental strand, 20409859 - 20409621
Alignment:
| Q |
9 |
gtttaccttccacctcttcttgattcatctccctacactgccgctagcaccgcctcattcaacggtggtcaaatgtgtaactacaacagctccaacaaca |
108 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||||| |||||||||| |||| |||||||||| | ||||||||||||| ||||| |
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| T |
20409859 |
gtttatcttccacctcttcttgattcatctccttacaccgccgctagcatcgccacattcaacggcgaccaaatgtgtaactccaaca------------ |
20409772 |
T |
|
| Q |
109 |
acactgatctaaaggagcacgtgtcctgtttctccacaacatctacaacatcaaatgttgtctctgttcacaacagcttcaacggcaacaacaatggaag |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||| ||||||||||||||| |
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| T |
20409771 |
acactgatctaaaggagcacgtgtcctgtttctccacaacatctacaacatcaaatgttgtcgttgcccacaacaacttcagtaacaacaacaatggaag |
20409672 |
T |
|
| Q |
209 |
ttttgatctcgtttcaccttctatgaatgcaacaatggatccttttgcaag |
259 |
Q |
| |
|
|||||||| ||||| |||||||||||||| ||||| |||||||||||||| |
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|
| T |
20409671 |
ctttgatcttgtttctccttctatgaatgctacaattgatccttttgcaag |
20409621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 118; Significance: 4e-60; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 9 - 259
Target Start/End: Original strand, 46312482 - 46312720
Alignment:
| Q |
9 |
gtttaccttccacctcttcttgattcatctccctacactgccgctagcaccgcctcattcaacggtggtcaaatgtgtaactacaacagctccaacaaca |
108 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||||| |||||||||| |||| |||||||||| | ||||||||||||| |||| | |
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| T |
46312482 |
gtttatcttccacctcttcttgattcatctccttacaccgccgctagcatcgccacattcaacggcgaccaaatgtgtaactccaac------------a |
46312569 |
T |
|
| Q |
109 |
acactgatctaaaggagcacgtgtcctgtttctccacaacatctacaacatcaaatgttgtctctgttcacaacagcttcaacggcaacaacaatggaag |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||| ||||||||||||||| |
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| T |
46312570 |
acactgatctaaaggagcacgtgtcctgtttctccacaacatctacaacatcaaatgttgtcgttgcccacaacaacttcagtaacaacaacaatggaag |
46312669 |
T |
|
| Q |
209 |
ttttgatctcgtttcaccttctatgaatgcaacaatggatccttttgcaag |
259 |
Q |
| |
|
|||||||| ||||| |||||||||||||| ||||| |||||||||||||| |
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| T |
46312670 |
ctttgatcttgtttctccttctatgaatgctacaattgatccttttgcaag |
46312720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 9 - 259
Target Start/End: Original strand, 40169054 - 40169283
Alignment:
| Q |
9 |
gtttaccttccacctcttcttgattcatctccctacactgccgctagcaccgcctcattcaacggtggtcaaatgtgtaactacaacagctccaacaaca |
108 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||||| || ||||||| |||| |||||||||| | ||||||||||||| ||||| |
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| T |
40169054 |
gtttatcttccacctcttcttgattcatctccttacaccgctgctagcatcgccacattcaacggcgaccaaatgtgtaactccaaca------------ |
40169141 |
T |
|
| Q |
109 |
acactgatctaaaggagcacgtgtcctgtttctccacaacatctacaacatcaaatgttgtctctgttcacaacagcttcaacggcaacaacaatggaag |
208 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||| ||||| ||||||||||||||| |
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| T |
40169142 |
acaccgatctaaaggagcacgtgtcctgtttctccacaacatc---------aaatgttgtcgctgcccacaacaacttcagtaacaacaacaatggaag |
40169232 |
T |
|
| Q |
209 |
ttttgatctcgtttcaccttctatgaatgcaacaatggatccttttgcaag |
259 |
Q |
| |
|
|||||||| ||||| |||||||||||||| ||||| |||||||||||||| |
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|
| T |
40169233 |
ctttgatcttgtttctccttctatgaatgctacaattgatccttttgcaag |
40169283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 131 - 237
Target Start/End: Complemental strand, 46483093 - 46482987
Alignment:
| Q |
131 |
gtcctgtttctccacaacatctacaacatcaaatgttgtctctgttcacaacagcttcaacggcaacaacaatggaagttttgatctcgtttcaccttct |
230 |
Q |
| |
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||||| ||||||||||| ||||| ||||||||||||||||||||| ||||||| ||||| | |||||||||||||||| |||||||| ||||| |||||| |
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| T |
46483093 |
gtcctatttctccacaatatctagaacatcaaatgttgtctctgtccacaacaacttcagcagcaacaacaatggaagctttgatcttgtttctccttct |
46482994 |
T |
|
| Q |
231 |
atgaatg |
237 |
Q |
| |
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| ||||| |
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|
| T |
46482993 |
acgaatg |
46482987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 278 - 358
Target Start/End: Complemental strand, 46482960 - 46482880
Alignment:
| Q |
278 |
tgtttctgcttttcctagcttgagatcactacaagataatcttcagcttcctttctttttctcctcggcggccgcggcgca |
358 |
Q |
| |
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||||||| ||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |
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| T |
46482960 |
tgtttctatttttcctagattgaggtcactacaagataatctccagcttcctttctttttctccacggcggccgcggcgca |
46482880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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