View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10104A_low_56 (Length: 393)
Name: NF10104A_low_56
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104A_low_56 |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 24 - 252
Target Start/End: Complemental strand, 28619346 - 28619118
Alignment:
| Q |
24 |
agaattggagaaaggtgaggaaatcattaacagagagacaaagaggaggtatttagaggagtgtaacagaacacaaagggtatctgatccgtatagtgga |
123 |
Q |
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| T |
28619346 |
agaattggagaaaggtgaggaaatcattaacagagagacaaagaggaggtatttagaggagtgtaacagaacacaaagggtatctgatccgtttagtgga |
28619247 |
T |
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| Q |
124 |
aattttggtcgctgggtgtataattatccctatctcagtaaaggaggcactcttactgaggtgaccattttcatttctccaaggagatcatctccatcca |
223 |
Q |
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| T |
28619246 |
aattttggtcgctgggtgtataattatccctatctcagtaaaggaggcactcttactgaggtgaccattttcatttctccaaggagatcatctccatcca |
28619147 |
T |
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| Q |
224 |
ttttatatttagtccatacttatttccat |
252 |
Q |
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| T |
28619146 |
ttttatatttagtccatacttatttccat |
28619118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 244 - 379
Target Start/End: Original strand, 28617803 - 28617938
Alignment:
| Q |
244 |
tatttccatctctatctccatattgcacattcacacactactttatttactctccttatcttgtttgataataggtcagcttctgtctttgttcaaacgt |
343 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28617803 |
tatttccatctctatctccatattgcacattcacacactactttatttactctccttatcttgtttgataataggtcagcttctgtctttgttcaaacgt |
28617902 |
T |
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| Q |
344 |
ctttctttattgcattctcttcccttgtgatgtcca |
379 |
Q |
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| T |
28617903 |
ctttctttattgcattctcttcccttgtgctgtcca |
28617938 |
T |
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