View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10104A_low_57 (Length: 391)
Name: NF10104A_low_57
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104A_low_57 |
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Alignment Details
Target: chr7 (Bit Score: 375; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 11 - 385
Target Start/End: Complemental strand, 48222465 - 48222091
Alignment:
| Q |
11 |
catagagggaccaaaaaagtgtacttaacagctgcacctcaatgtccttttcctgatcaacatctcaaaggagcattatcaacaggactatttgactatg |
110 |
Q |
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| T |
48222465 |
catagagggaccaaaaaagtgtacttaacagctgcacctcaatgtccttttcctgatcaacatctcaaaggagcattatcaacaggactatttgactatg |
48222366 |
T |
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| Q |
111 |
tttgggttcaattttacaacaatggtccttgtcaaattgaagctagtaacctcaacaagttccaaaaatcttggaatcaatgggtttcgactattaaggt |
210 |
Q |
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| T |
48222365 |
tttgggttcaattttacaacaatggtccttgtcaaattgaagctagtaacctcaacaagttccaaaaatcttggaatcaatgggtttcgactattaaggt |
48222266 |
T |
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| Q |
211 |
tagtaagatttatgttggagttcctgcctcaccatcagctgctactgctagtagtggttatgtgccaacacaggtacttataagtaaagtgttgcctttt |
310 |
Q |
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| T |
48222265 |
tagtaagatttatgttggagttcctgcctcaccatcagctgctactgctagtagtggttatgtgccaacacaggtacttataagtaaagtgttgcctttt |
48222166 |
T |
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| Q |
311 |
gttaaaagatcaagaaagtatggaggtgtgatgctttgggataggtttgctgataagcaaaatggatactctagg |
385 |
Q |
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| T |
48222165 |
gttaaaagatcaagaaagtatggaggtgtgatgctttgggataggtttgctgataagcaaaatggatactctagg |
48222091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 133
Target Start/End: Original strand, 47980378 - 47980419
Alignment:
| Q |
92 |
acaggactatttgactatgtttgggttcaattttacaacaat |
133 |
Q |
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| T |
47980378 |
acaggtctttttgactatgtttgggtgcaattttacaacaat |
47980419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 129
Target Start/End: Original strand, 8139403 - 8139437
Alignment:
| Q |
95 |
ggactatttgactatgtttgggttcaattttacaa |
129 |
Q |
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| T |
8139403 |
ggactttttgactatgtttgggttcaattttacaa |
8139437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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