View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10104A_low_6 (Length: 543)
Name: NF10104A_low_6
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104A_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 491; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 27 - 525
Target Start/End: Complemental strand, 7690623 - 7690125
Alignment:
| Q |
27 |
tatgaatgaattcactaagttgaattagttggtgcatatcatgatgttatacataatgtaggttgattcagtttcggtacgtgttcattaattactgttt |
126 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7690623 |
tatgaatgaattcactaagttgaattagttggttcatatcatgatgttatacataatgtaggttgattcagtttcggtacgtgttcattaattactgttt |
7690524 |
T |
|
| Q |
127 |
tatgttaatattgtatgactgaagggaacatgtatccatcggtgtgtgttgcatcatggaaggggatgaaatatgagttcgaagctggttcaaaagctac |
226 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
7690523 |
tatgttaatattgtatgactgaagggaacatgtatccatcggtgtgtgttgcatcatggaaggggatgaaatatgagtttgaagctggttcaaaagctac |
7690424 |
T |
|
| Q |
227 |
aattatggtgctccttaaagatgcatttggaaacggcatatctgagacgactcaagtgtcatatatgcctgattttaagttatctatgttgagcgaaaat |
326 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7690423 |
aattatggtgctccttaaagatgcatttggaaacggcatatctgagacgactcaagtgtcatatatgcctgattttaagttatctatgttgagcgaaaat |
7690324 |
T |
|
| Q |
327 |
ggctctattgcaactgagcctgatatctctaacatggggtggaatgagtttgattatatagtcattgagttcgtagcaaccaaagccggaaacttctcta |
426 |
Q |
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| T |
7690323 |
ggctctattgcaactgagcctgatatctctaacatggggtggaatgagtttgattatatagtcattgagttcgtagcaaccaaagccggaaacttctcta |
7690224 |
T |
|
| Q |
427 |
tgcacatagaaggaggaaatcaaacattgaatggttctcccttaccattaaaagtgaatccaggttttgtgctatttgcttcaatacacattgtgatgt |
525 |
Q |
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| T |
7690223 |
tgcacatagaaggaggaaatcaaacattgaatggttctcccttaccattaaaagtgaatccaggttttgtgctatttgcttcaatacacattgtgatgt |
7690125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 28 - 512
Target Start/End: Complemental strand, 13889560 - 13889075
Alignment:
| Q |
28 |
atgaatgaattcactaagttgaattagttggtgcatatcatgatgt-tatacataatgtaggttgattcagtttcggtacgtgttcattaattactgttt |
126 |
Q |
| |
|
||||||| ||| ||||||||||||| ||| |||||||||||||||| |||||||||||||| ||||||| |||| ||| ||| |||||||| || || |
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| T |
13889560 |
atgaatgcatttactaagttgaattggttagtgcatatcatgatgtatatacataatgtagtttgattcggttttcgtataagtttattaattaatggtt |
13889461 |
T |
|
| Q |
127 |
tatgttaatattgtatgactgaagggaacatgtatccatcggtgtgtgttgcatcatggaaggggatgaaatatgagttcgaagctggttcaaaagctac |
226 |
Q |
| |
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||||| |||| ||||| |||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
13889460 |
gatgttgttattctatgattgaagggaacatgtatccgtctgtgtgtgttgcatcatggaaggggatgaaatatgagtttgaagctggttcaaaagctac |
13889361 |
T |
|
| Q |
227 |
aattatggtgctccttaaagatgcatttggaaacggcatatctgagacgactcaagtgtcatatatgcctgattttaagttatctatgttgagcgaaaat |
326 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||| | ||||||||||| |||||| |
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| T |
13889360 |
aattatggtgctcctaaaagatgcatttggaaacggcatatccgagacgactgaagtgtcctatatgcctgattttaaactgtctatgttgagtgaaaat |
13889261 |
T |
|
| Q |
327 |
ggctctattgcaactgagcctgatatctctaacatggggtggaatgagtttgattatatagtcattgagttcgtagcaaccaaagccggaaacttctcta |
426 |
Q |
| |
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|| |||||||||| ||||| |||||||| |||||||| |||||||||||||||||||| ||||||||||| || | |||||||| |||||||||||| |
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| T |
13889260 |
ggttctattgcaagcgagcccgatatctccaacatgggatggaatgagtttgattatattgtcattgagtttgtcgtgaccaaagctggaaacttctctt |
13889161 |
T |
|
| Q |
427 |
tgcacatagaaggaggaaatcaaacattgaatggttctcccttaccattaaaagtgaatccaggttttgtgctatttgcttcaata |
512 |
Q |
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| T |
13889160 |
tgcgcattgaaggaggaaatcaaacattgaatggttctcccttgccattaaaagttaatccaggttttgtgcttttcgcttcaata |
13889075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 28 - 512
Target Start/End: Complemental strand, 14029685 - 14029200
Alignment:
| Q |
28 |
atgaatgaattcactaagttgaattagttggtgcatatcatgatgt-tatacataatgtaggttgattcagtttcggtacgtgttcattaattactgttt |
126 |
Q |
| |
|
||||||| ||| ||||||||||||| ||| |||||||||||||||| |||||||||||||| ||||||| |||| ||| ||| |||||||| || || |
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| T |
14029685 |
atgaatgcatttactaagttgaattggttagtgcatatcatgatgtatatacataatgtagtttgattcggttttcgtataagtttattaattaatggtt |
14029586 |
T |
|
| Q |
127 |
tatgttaatattgtatgactgaagggaacatgtatccatcggtgtgtgttgcatcatggaaggggatgaaatatgagttcgaagctggttcaaaagctac |
226 |
Q |
| |
|
||||| |||| ||||| |||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
14029585 |
gatgttgttattctatgattgaagggaacatgtatccgtctgtgtgtgttgcatcatggaaggggatgaaatatgagtttgaagctggttcaaaagctac |
14029486 |
T |
|
| Q |
227 |
aattatggtgctccttaaagatgcatttggaaacggcatatctgagacgactcaagtgtcatatatgcctgattttaagttatctatgttgagcgaaaat |
326 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||| | ||||||||||| |||||| |
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| T |
14029485 |
aattatggtgctcctaaaagatgcatttggaaacggcatatccgagacgactgaagtgtcctatatgcctgattttaaactgtctatgttgagtgaaaat |
14029386 |
T |
|
| Q |
327 |
ggctctattgcaactgagcctgatatctctaacatggggtggaatgagtttgattatatagtcattgagttcgtagcaaccaaagccggaaacttctcta |
426 |
Q |
| |
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|| |||||||||| ||||| |||||||| |||||||| |||||||||||||||||||| ||||||||||| || | |||||||| |||||||||||| |
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| T |
14029385 |
ggttctattgcaagcgagcccgatatctccaacatgggatggaatgagtttgattatattgtcattgagtttgtcgtgaccaaagctggaaacttctctt |
14029286 |
T |
|
| Q |
427 |
tgcacatagaaggaggaaatcaaacattgaatggttctcccttaccattaaaagtgaatccaggttttgtgctatttgcttcaata |
512 |
Q |
| |
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||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| || ||||||||| |
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| T |
14029285 |
tgcgcattgaaggaggaaatcaaacattgaatggttctcccttgccattaaaagttaatccaggttttgtgcttttcgcttcaata |
14029200 |
T |
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