View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10104A_low_63 (Length: 378)

Name: NF10104A_low_63
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10104A_low_63
NF10104A_low_63
[»] chr2 (5 HSPs)
chr2 (10-218)||(28629894-28630102)
chr2 (231-372)||(21203372-21203508)
chr2 (63-138)||(28615620-28615695)
chr2 (230-282)||(21949748-21949800)
chr2 (280-324)||(45212918-45212962)
[»] chr4 (5 HSPs)
chr4 (230-372)||(41309989-41310131)
chr4 (247-372)||(34160855-34160980)
chr4 (230-325)||(2049168-2049265)
chr4 (230-325)||(12763217-12763314)
chr4 (234-291)||(10457425-10457482)
[»] chr1 (10 HSPs)
chr1 (230-372)||(13129226-13129368)
chr1 (230-372)||(52316161-52316303)
chr1 (230-372)||(34106295-34106437)
chr1 (231-372)||(43699463-43699604)
chr1 (236-372)||(3525990-3526125)
chr1 (230-363)||(27491930-27492063)
chr1 (231-351)||(41114626-41114744)
chr1 (230-345)||(45602845-45602957)
chr1 (302-372)||(11084678-11084748)
chr1 (230-274)||(11084773-11084817)
[»] chr8 (5 HSPs)
chr8 (230-365)||(40318404-40318539)
chr8 (230-372)||(15795852-15795995)
chr8 (231-356)||(2611739-2611864)
chr8 (230-324)||(40716101-40716197)
chr8 (230-285)||(10150704-10150759)
[»] chr6 (17 HSPs)
chr6 (235-370)||(8859276-8859411)
chr6 (231-341)||(5764362-5764475)
chr6 (231-341)||(5767897-5768010)
chr6 (231-341)||(5771432-5771545)
chr6 (231-341)||(5774967-5775080)
chr6 (231-341)||(5778502-5778615)
chr6 (231-341)||(5782037-5782150)
chr6 (231-341)||(5785572-5785685)
chr6 (231-341)||(5789107-5789220)
chr6 (231-341)||(5792642-5792755)
chr6 (231-341)||(5796177-5796290)
chr6 (231-341)||(5799712-5799825)
chr6 (231-341)||(5803247-5803360)
chr6 (231-341)||(5806782-5806895)
chr6 (231-341)||(5810317-5810430)
chr6 (231-341)||(5813852-5813965)
chr6 (231-341)||(5817387-5817500)
[»] chr3 (4 HSPs)
chr3 (230-372)||(34466622-34466761)
chr3 (234-356)||(51499657-51499782)
chr3 (238-324)||(3847675-3847763)
chr3 (230-321)||(11536388-11536481)
[»] chr7 (5 HSPs)
chr7 (230-363)||(34483967-34484100)
chr7 (231-369)||(37370508-37370646)
chr7 (260-325)||(38836323-38836390)
chr7 (242-323)||(39540534-39540617)
chr7 (259-324)||(49094359-49094426)
[»] chr5 (1 HSPs)
chr5 (231-324)||(36863586-36863681)


Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 10 - 218
Target Start/End: Complemental strand, 28630102 - 28629894
Alignment:
Q  10 tatgaacggattgacgtttgttggctaattgtttcatctctggtatttgtttcctttgtgatacatttctttttagaattctacacaatgtccaaatttc 109  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28630102 tatgaacggattgaagtttgttggctaattgtttcatctctggtatttgtttcctttgtgatacatttctttttagaattctacacaatgtccaaatttc 28630003  T
Q  110 ctgcatgtcaaggagaaaaatcattagaagatatgtttgttcaatatgaaaaagatttaatttgatgtttcattgattgtaataggttggaattaccctt 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28630002 ctgcatgtcaaggagaaaaatcattagaagatatgtttgttcaatatgaaaaagatttaatttgatgtttcattgattgtaataggttggaattaccctt 28629903  T
Q  210 gtaatccaa 218  Q
    |||||||||    
T  28629902 gtaatccaa 28629894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 231 - 372
Target Start/End: Complemental strand, 21203508 - 21203372
Alignment:
Q  231 aaagcaatgaaaataaaatgcaaaccacgattaaggcctgaacctgtttacaaaagagagaaatgaagccaaaggctatcctatagcaacaaaacaaagt 330  Q
    |||||||||||||||||||||||| || ||||||||||||||||| |||||||||||| |||| |||| ||||||||||||||||||||||    |||||    
T  21203508 aaagcaatgaaaataaaatgcaaatcaggattaaggcctgaacctatttacaaaagag-gaaaggaaggcaaaggctatcctatagcaaca----aaagt 21203414  T
Q  331 gtagcatgccaagaaagcatagggctccacatgcccctaaag 372  Q
    ||||| |||||||||||| || |||| |||||| ||||||||    
T  21203413 gtagcctgccaagaaagcttatggctgcacatgtccctaaag 21203372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 63 - 138
Target Start/End: Complemental strand, 28615695 - 28615620
Alignment:
Q  63 ctttgtgatacatttctttttagaattctacacaatgtccaaatttcctgcatgtcaaggagaaaaatcattagaa 138  Q
    |||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||   ||||||||||||||||    
T  28615695 ctttttgatacatttcttttgaaaattctacacaatgtccaaatttcctgcatgtcatatagaaaaatcattagaa 28615620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 230 - 282
Target Start/End: Original strand, 21949748 - 21949800
Alignment:
Q  230 caaagcaatgaaaataaaatgcaaaccacgattaaggcctgaacctgtttaca 282  Q
    ||||||||| ||||||||||| |||||| ||||||||||||||||||||||||    
T  21949748 caaagcaatcaaaataaaatgaaaaccaggattaaggcctgaacctgtttaca 21949800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 280 - 324
Target Start/End: Complemental strand, 45212962 - 45212918
Alignment:
Q  280 acaaaagagagaaatgaagccaaaggctatcctatagcaacaaaa 324  Q
    |||||||||||||| ||||||||| | ||||||||||||||||||    
T  45212962 acaaaagagagaaaggaagccaaatgatatcctatagcaacaaaa 45212918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 115; Significance: 2e-58; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 230 - 372
Target Start/End: Complemental strand, 41310131 - 41309989
Alignment:
Q  230 caaagcaatgaaaataaaatgcaaaccacgattaaggcctgaacctgtttacaaaagagagaaatgaagccaaaggctatcctatagcaacaaaacaaag 329  Q
    |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||    
T  41310131 caaagcaatgaaaataaaatgcaaaccaggattaaggcttgaacctgtttacaaaagagagaaaggacgccaaaggctaccctatagcaacaaaacaaag 41310032  T
Q  330 tgtagcatgccaagaaagcatagggctccacatgcccctaaag 372  Q
    |||||| |||||||||||||||||||| |||||||||||||||    
T  41310031 tgtagcctgccaagaaagcatagggctgcacatgcccctaaag 41309989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 247 - 372
Target Start/End: Original strand, 34160855 - 34160980
Alignment:
Q  247 aatgcaaaccacgattaaggcctgaacctgtttacaaaagagagaaatgaagccaaaggctatcctatagcaacaaaacaaagtgtagcatgccaagaaa 346  Q
    |||||||| ||  |||||||||||| | ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| | ||||||||||    
T  34160855 aatgcaaatcattattaaggcctgagcatgtttacaaaagagagaaaggaagccaaaagctatcctatagcaacaaaacaaagtgtaacttgccaagaaa 34160954  T
Q  347 gcatagggctccacatgcccctaaag 372  Q
    |||||||| | |||||||||||||||    
T  34160955 gcatagggttgcacatgcccctaaag 34160980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 230 - 325
Target Start/End: Complemental strand, 2049265 - 2049168
Alignment:
Q  230 caaagcaatgaaaataaaatgcaaaccacgattaaggcctgaacctgttt--acaaaagagagaaatgaagccaaaggctatcctatagcaacaaaac 325  Q
    |||||||||||||||| || ||||| || ||||||||||||||||| |||  |||||||||||||| |||||||||||||||||||||||||||||||    
T  2049265 caaagcaatgaaaatataaagcaaatcaggattaaggcctgaacctatttgcacaaaagagagaaaggaagccaaaggctatcctatagcaacaaaac 2049168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 230 - 325
Target Start/End: Original strand, 12763217 - 12763314
Alignment:
Q  230 caaagcaatgaaaataaaatgcaaaccacgattaaggcctgaacctgttt--acaaaagagagaaatgaagccaaaggctatcctatagcaacaaaac 325  Q
    |||||||||||||||| || ||||| || |||||||||||||||||||||  |||||||||||||| ||||||||| |||||||||||||||||||||    
T  12763217 caaagcaatgaaaatataaagcaaatcaggattaaggcctgaacctgtttacacaaaagagagaaaggaagccaaaagctatcctatagcaacaaaac 12763314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 234 - 291
Target Start/End: Original strand, 10457425 - 10457482
Alignment:
Q  234 gcaatgaaaataaaatgcaaaccacgattaaggcctgaacctgtttacaaaagagaga 291  Q
    ||||||| ||||||||||||| || |||||||||||||||||||||||| ||||||||    
T  10457425 gcaatgagaataaaatgcaaatcaggattaaggcctgaacctgtttacacaagagaga 10457482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 115; Significance: 2e-58; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 230 - 372
Target Start/End: Complemental strand, 13129368 - 13129226
Alignment:
Q  230 caaagcaatgaaaataaaatgcaaaccacgattaaggcctgaacctgtttacaaaagagagaaatgaagccaaaggctatcctatagcaacaaaacaaag 329  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  ||||| |||||||||||||| ||||||||||||||||||||    
T  13129368 caaagcaatgaaaataaaatgcaaaccaggattaaggcctgaacctgtttacaaaagtaagaaaggaagccaaaggctaccctatagcaacaaaacaaag 13129269  T
Q  330 tgtagcatgccaagaaagcatagggctccacatgcccctaaag 372  Q
    |||||| |||||||||||||||||||| |||||||||||||||    
T  13129268 tgtagcctgccaagaaagcatagggctgcacatgcccctaaag 13129226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 230 - 372
Target Start/End: Complemental strand, 52316303 - 52316161
Alignment:
Q  230 caaagcaatgaaaataaaatgcaaaccacgattaaggcctgaacctgtttacaaaagagagaaatgaagccaaaggctatcctatagcaacaaaacaaag 329  Q
    ||||||||||||||||| ||||||| || ||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  52316303 caaagcaatgaaaataacatgcaaatcaggattaaggcatgaacctgtttacaaaagagagaaacgaaaccaaaggctatcctatagcaacaaaacaaag 52316204  T
Q  330 tgtagcatgccaagaaagcatagggctccacatgcccctaaag 372  Q
    |||| | |||||||||||||||||||| |||||||||||||||    
T  52316203 tgtaacttgccaagaaagcatagggctgcacatgcccctaaag 52316161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 230 - 372
Target Start/End: Original strand, 34106295 - 34106437
Alignment:
Q  230 caaagcaatgaaaataaaatgcaaaccacgattaaggcctgaacctgtttacaaaagagagaaatgaagccaaaggctatcctatagcaacaaaacaaag 329  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||    
T  34106295 caaagcaatgaaaataaaatgcaaaccatgattaaggcctgaacctgtttacaaaagagagaaaggaagccaaaggctaccctatagcaacaaaataaag 34106394  T
Q  330 tgtagcatgccaagaaagcatagggctccacatgcccctaaag 372  Q
    | || | |||||||||||||||||| | ||||||||| |||||    
T  34106395 tataacctgccaagaaagcatagggttgcacatgcccttaaag 34106437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 231 - 372
Target Start/End: Complemental strand, 43699604 - 43699463
Alignment:
Q  231 aaagcaatgaaaataaaatgcaaaccacgattaaggcctgaacctgtttacaaaagagagaaatgaagccaaaggctatcctatagcaacaaaacaaagt 330  Q
    ||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||  ||| ||||||||||||||||||||||||||||||| ||||    
T  43699604 aaagcaatgaaaatagaatgcaaacgaggattaaggcctgaacctgtttacaaaagaggaaaaggaagccaaaggctatcctatagcaacaaaactaagt 43699505  T
Q  331 gtagcatgccaagaaagcatagggctccacatgcccctaaag 372  Q
    ||||| ||||||||||||||| |||| |||||| ||||||||    
T  43699504 gtagcttgccaagaaagcatatggctgcacatgtccctaaag 43699463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 236 - 372
Target Start/End: Complemental strand, 3526125 - 3525990
Alignment:
Q  236 aatgaaaataaaatgcaaaccacgattaaggcctgaacctgtttacaaaagagagaaatgaagccaaaggctatcctatagcaacaaaacaaagtgtagc 335  Q
    ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||||| |    
T  3526125 aatgaaaataaaatgcaaatcaggattaaggcctgaacctgtttacaaaagagagaaaggaagcc-aaggttatcctatagcaacaaaacaaagtgtaac 3526027  T
Q  336 atgccaagaaagcatagggctccacatgcccctaaag 372  Q
     |||||||||||||||| ||| |||||||||||||||    
T  3526026 ctgccaagaaagcatagagctgcacatgcccctaaag 3525990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 230 - 363
Target Start/End: Complemental strand, 27492063 - 27491930
Alignment:
Q  230 caaagcaatgaaaataaaatgcaaaccacgattaaggcctgaacctgtttacaaaagagagaaatgaagccaaaggctatcctatagcaacaaaacaaag 329  Q
    |||||||||||||||||||| ||||||| ||||||||| |||| || ||||||||||||||||| ||||||||||||||||||||||||||||| |||||    
T  27492063 caaagcaatgaaaataaaattcaaaccatgattaaggcttgaatctatttacaaaagagagaaaggaagccaaaggctatcctatagcaacaaagcaaag 27491964  T
Q  330 tgtagcatgccaagaaagcatagggctccacatg 363  Q
    |||||| | | |||||||||||||||| ||||||    
T  27491963 tgtagcctactaagaaagcatagggctgcacatg 27491930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 231 - 351
Target Start/End: Complemental strand, 41114744 - 41114626
Alignment:
Q  231 aaagcaatgaaaataaaatgcaaaccacgattaaggcctgaacctgtttacaaaagagagaaatgaagccaaaggctatcctatagcaacaaaacaaagt 330  Q
    |||||||| |||||| ||||||||||| ||| |||| ||||||||||||||||||||| |||  ||||||||||||||||||||||||||||||| ||||    
T  41114744 aaagcaatcaaaatagaatgcaaaccaggat-aaggtctgaacctgtttacaaaagagggaag-gaagccaaaggctatcctatagcaacaaaactaagt 41114647  T
Q  331 gtagcatgccaagaaagcata 351  Q
    ||||| |||||||||||||||    
T  41114646 gtagcctgccaagaaagcata 41114626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 230 - 345
Target Start/End: Original strand, 45602845 - 45602957
Alignment:
Q  230 caaagcaatgaaaataaaatgcaaaccacgattaaggcctgaacctgtttacaaaagagagaaatgaagccaaaggctatcctatagcaacaaaacaaag 329  Q
    ||||||||||||||||||||||||| || |||||| |||| ||||||||||||||||||||||| ||   |||||| ||||||||| ||| |||||||||    
T  45602845 caaagcaatgaaaataaaatgcaaatcaggattaaagcctcaacctgtttacaaaagagagaaagga---caaaggatatcctatatcaataaaacaaag 45602941  T
Q  330 tgtagcatgccaagaa 345  Q
    |||| | |||||||||    
T  45602942 tgtaacttgccaagaa 45602957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 302 - 372
Target Start/End: Complemental strand, 11084748 - 11084678
Alignment:
Q  302 aaggctatcctatagcaacaaaacaaagtgtagcatgccaagaaagcatagggctccacatgcccctaaag 372  Q
    ||||||| |||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||    
T  11084748 aaggctaccctatagcaacaaaacaaagtgtagcctgccaagaaagcataggactgcacatgcccctaaag 11084678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 230 - 274
Target Start/End: Complemental strand, 11084817 - 11084773
Alignment:
Q  230 caaagcaatgaaaataaaatgcaaaccacgattaaggcctgaacc 274  Q
    |||||||||||||||||||||||||||| ||||||||||||||||    
T  11084817 caaagcaatgaaaataaaatgcaaaccaggattaaggcctgaacc 11084773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 104; Significance: 9e-52; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 230 - 365
Target Start/End: Original strand, 40318404 - 40318539
Alignment:
Q  230 caaagcaatgaaaataaaatgcaaaccacgattaaggcctgaacctgtttacaaaagagagaaatgaagccaaaggctatcctatagcaacaaaacaaag 329  Q
    |||||||||||||||||||| ||||||| |||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  40318404 caaagcaatgaaaataaaattcaaaccaggattaaagcctgaacctatttacaaaagagagaaaggaagccaaaggctatcctatagcaacaaaacaaag 40318503  T
Q  330 tgtagcatgccaagaaagcatagggctccacatgcc 365  Q
    |||||| |||||||||||||||||| | ||||||||    
T  40318504 tgtagcctgccaagaaagcatagggttgcacatgcc 40318539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 230 - 372
Target Start/End: Original strand, 15795852 - 15795995
Alignment:
Q  230 caaagcaatgaaaataaaatgcaaaccacgattaaggcctgaacctgtttaca--aaagagagaaatgaagccaaaggctatcctatagcaacaaaacaa 327  Q
    |||||||||||||||||||||||||||| |||||||| |||||  ||||||||  |||||||||||||||| |||||||| |||||||||||||||||||    
T  15795852 caaagcaatgaaaataaaatgcaaaccatgattaaggtctgaatttgtttacacaaaagagagaaatgaagtcaaaggctttcctatagcaacaaaacaa 15795951  T
Q  328 agtgtagcatgccaagaaagcatagggctccacatgcccctaaag 372  Q
    |||||||| |||| ||||||||||||||| |||||||||||||||    
T  15795952 agtgtagcctgcc-agaaagcatagggctgcacatgcccctaaag 15795995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 231 - 356
Target Start/End: Original strand, 2611739 - 2611864
Alignment:
Q  231 aaagcaatgaaaataaaatgcaaaccacgattaaggcctgaacctgtttacaaaagagagaaatgaagccaaaggctatcctatagcaacaaaacaaagt 330  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||| |||| ||||||||||||||||||| ||||||||||| |||     
T  2611739 aaagcaatgaaaatagaatgcaaaccaggattaaggcctgaacctatttacaaaagagggaaaggaagccaaaggctatcctaaagcaacaaaactaaga 2611838  T
Q  331 gtagcatgccaagaaagcatagggct 356  Q
    ||||| |||||||||| |||| ||||    
T  2611839 gtagcctgccaagaaaacatatggct 2611864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 230 - 324
Target Start/End: Complemental strand, 40716197 - 40716101
Alignment:
Q  230 caaagcaatgaaaataaaatgcaaaccacgattaaggcctgaacctgttt--acaaaagagagaaatgaagccaaaggctatcctatagcaacaaaa 324  Q
    |||||||||||||||||||||||||||| ||||||||| ||||||| |||  |||||||||||||| ||||  ||||| |||||| ||| |||||||    
T  40716197 caaagcaatgaaaataaaatgcaaaccaggattaaggcatgaacctatttacacaaaagagagaaaggaaggtaaaggttatcctgtagtaacaaaa 40716101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 230 - 285
Target Start/End: Complemental strand, 10150759 - 10150704
Alignment:
Q  230 caaagcaatgaaaataaaatgcaaaccacgattaaggcctgaacctgtttacaaaa 285  Q
    |||||||||||||||||| ||||||| | ||||||||| |||||||||||||||||    
T  10150759 caaagcaatgaaaataaattgcaaactaggattaaggcttgaacctgtttacaaaa 10150704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 100; Significance: 2e-49; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 235 - 370
Target Start/End: Complemental strand, 8859411 - 8859276
Alignment:
Q  235 caatgaaaataaaatgcaaaccacgattaaggcctgaacctgtttacaaaagagagaaatgaagccaaaggctatcctatagcaacaaaacaaagtgtag 334  Q
    ||||||||||||||||||||  | |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||    
T  8859411 caatgaaaataaaatgcaaattaggattaaggcctgaatctgtttacaaaagagagaaaggaagccaaaggctatcctatagaaacaaaacaaagtgtag 8859312  T
Q  335 catgccaagaaagcatagggctccacatgcccctaa 370  Q
    | | |||||||||||||||||| |||||||||||||    
T  8859311 cctaccaagaaagcatagggctgcacatgcccctaa 8859276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 231 - 341
Target Start/End: Original strand, 5764362 - 5764475
Alignment:
Q  231 aaagcaatgaaaataaaatgcaaaccacgattaaggcctgaacctgtttacaaaa--gagagaaatgaagccaaaggctatcctatagcaac-aaaacaa 327  Q
    ||||||||||||||||||||||||  | ||||||||  |||||||||||||| ||  |||||||| |||||||||||||||||||||||||| |||||||    
T  5764362 aaagcaatgaaaataaaatgcaaattaggattaaggtttgaacctgtttacacaatagagagaaaggaagccaaaggctatcctatagcaacaaaaacaa 5764461  T
Q  328 agtgtagcatgcca 341  Q
    || ||||| |||||    
T  5764462 agagtagcctgcca 5764475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 231 - 341
Target Start/End: Original strand, 5767897 - 5768010
Alignment:
Q  231 aaagcaatgaaaataaaatgcaaaccacgattaaggcctgaacctgtttacaaaa--gagagaaatgaagccaaaggctatcctatagcaac-aaaacaa 327  Q
    ||||||||||||||||||||||||  | ||||||||  |||||||||||||| ||  |||||||| |||||||||||||||||||||||||| |||||||    
T  5767897 aaagcaatgaaaataaaatgcaaattaggattaaggtttgaacctgtttacacaatagagagaaaggaagccaaaggctatcctatagcaacaaaaacaa 5767996  T
Q  328 agtgtagcatgcca 341  Q
    || ||||| |||||    
T  5767997 agagtagcctgcca 5768010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 231 - 341
Target Start/End: Original strand, 5771432 - 5771545
Alignment:
Q  231 aaagcaatgaaaataaaatgcaaaccacgattaaggcctgaacctgtttacaaaa--gagagaaatgaagccaaaggctatcctatagcaac-aaaacaa 327  Q
    ||||||||||||||||||||||||  | ||||||||  |||||||||||||| ||  |||||||| |||||||||||||||||||||||||| |||||||    
T  5771432 aaagcaatgaaaataaaatgcaaattaggattaaggtttgaacctgtttacacaatagagagaaaggaagccaaaggctatcctatagcaacaaaaacaa 5771531  T
Q  328 agtgtagcatgcca 341  Q
    || ||||| |||||    
T  5771532 agagtagcctgcca 5771545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 231 - 341
Target Start/End: Original strand, 5774967 - 5775080
Alignment:
Q  231 aaagcaatgaaaataaaatgcaaaccacgattaaggcctgaacctgtttacaaaa--gagagaaatgaagccaaaggctatcctatagcaac-aaaacaa 327  Q
    ||||||||||||||||||||||||  | ||||||||  |||||||||||||| ||  |||||||| |||||||||||||||||||||||||| |||||||    
T  5774967 aaagcaatgaaaataaaatgcaaattaggattaaggtttgaacctgtttacacaatagagagaaaggaagccaaaggctatcctatagcaacaaaaacaa 5775066  T
Q  328 agtgtagcatgcca 341  Q
    || ||||| |||||    
T  5775067 agagtagcctgcca 5775080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 231 - 341
Target Start/End: Original strand, 5778502 - 5778615
Alignment:
Q  231 aaagcaatgaaaataaaatgcaaaccacgattaaggcctgaacctgtttacaaaa--gagagaaatgaagccaaaggctatcctatagcaac-aaaacaa 327  Q
    ||||||||||||||||||||||||  | ||||||||  |||||||||||||| ||  |||||||| |||||||||||||||||||||||||| |||||||    
T  5778502 aaagcaatgaaaataaaatgcaaattaggattaaggtttgaacctgtttacacaatagagagaaaggaagccaaaggctatcctatagcaacaaaaacaa 5778601  T
Q  328 agtgtagcatgcca 341  Q
    || ||||| |||||    
T  5778602 agagtagcctgcca 5778615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 231 - 341
Target Start/End: Original strand, 5782037 - 5782150
Alignment:
Q  231 aaagcaatgaaaataaaatgcaaaccacgattaaggcctgaacctgtttacaaaa--gagagaaatgaagccaaaggctatcctatagcaac-aaaacaa 327  Q
    ||||||||||||||||||||||||  | ||||||||  |||||||||||||| ||  |||||||| |||||||||||||||||||||||||| |||||||    
T  5782037 aaagcaatgaaaataaaatgcaaattaggattaaggtttgaacctgtttacacaatagagagaaaggaagccaaaggctatcctatagcaacaaaaacaa 5782136  T
Q  328 agtgtagcatgcca 341  Q
    || ||||| |||||    
T  5782137 agagtagcctgcca 5782150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 231 - 341
Target Start/End: Original strand, 5785572 - 5785685
Alignment:
Q  231 aaagcaatgaaaataaaatgcaaaccacgattaaggcctgaacctgtttacaaaa--gagagaaatgaagccaaaggctatcctatagcaac-aaaacaa 327  Q
    ||||||||||||||||||||||||  | ||||||||  |||||||||||||| ||  |||||||| |||||||||||||||||||||||||| |||||||    
T  5785572 aaagcaatgaaaataaaatgcaaattaggattaaggtttgaacctgtttacacaatagagagaaaggaagccaaaggctatcctatagcaacaaaaacaa 5785671  T
Q  328 agtgtagcatgcca 341  Q
    || ||||| |||||    
T  5785672 agagtagcctgcca 5785685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 231 - 341
Target Start/End: Original strand, 5789107 - 5789220
Alignment:
Q  231 aaagcaatgaaaataaaatgcaaaccacgattaaggcctgaacctgtttacaaaa--gagagaaatgaagccaaaggctatcctatagcaac-aaaacaa 327  Q
    ||||||||||||||||||||||||  | ||||||||  |||||||||||||| ||  |||||||| |||||||||||||||||||||||||| |||||||    
T  5789107 aaagcaatgaaaataaaatgcaaattaggattaaggtttgaacctgtttacacaatagagagaaaggaagccaaaggctatcctatagcaacaaaaacaa 5789206  T
Q  328 agtgtagcatgcca 341  Q
    || ||||| |||||    
T  5789207 agagtagcctgcca 5789220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 231 - 341
Target Start/End: Original strand, 5792642 - 5792755
Alignment:
Q  231 aaagcaatgaaaataaaatgcaaaccacgattaaggcctgaacctgtttacaaaa--gagagaaatgaagccaaaggctatcctatagcaac-aaaacaa 327  Q
    ||||||||||||||||||||||||  | ||||||||  |||||||||||||| ||  |||||||| |||||||||||||||||||||||||| |||||||    
T  5792642 aaagcaatgaaaataaaatgcaaattaggattaaggtttgaacctgtttacacaatagagagaaaggaagccaaaggctatcctatagcaacaaaaacaa 5792741  T
Q  328 agtgtagcatgcca 341  Q
    || ||||| |||||    
T  5792742 agagtagcctgcca 5792755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 231 - 341
Target Start/End: Original strand, 5796177 - 5796290
Alignment:
Q  231 aaagcaatgaaaataaaatgcaaaccacgattaaggcctgaacctgtttacaaaa--gagagaaatgaagccaaaggctatcctatagcaac-aaaacaa 327  Q
    ||||||||||||||||||||||||  | ||||||||  |||||||||||||| ||  |||||||| |||||||||||||||||||||||||| |||||||    
T  5796177 aaagcaatgaaaataaaatgcaaattaggattaaggtttgaacctgtttacacaatagagagaaaggaagccaaaggctatcctatagcaacaaaaacaa 5796276  T
Q  328 agtgtagcatgcca 341  Q
    || ||||| |||||    
T  5796277 agagtagcctgcca 5796290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 231 - 341
Target Start/End: Original strand, 5799712 - 5799825
Alignment:
Q  231 aaagcaatgaaaataaaatgcaaaccacgattaaggcctgaacctgtttacaaaa--gagagaaatgaagccaaaggctatcctatagcaac-aaaacaa 327  Q
    ||||||||||||||||||||||||  | ||||||||  |||||||||||||| ||  |||||||| |||||||||||||||||||||||||| |||||||    
T  5799712 aaagcaatgaaaataaaatgcaaattaggattaaggtttgaacctgtttacacaatagagagaaaggaagccaaaggctatcctatagcaacaaaaacaa 5799811  T
Q  328 agtgtagcatgcca 341  Q
    || ||||| |||||    
T  5799812 agagtagcctgcca 5799825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 231 - 341
Target Start/End: Original strand, 5803247 - 5803360
Alignment:
Q  231 aaagcaatgaaaataaaatgcaaaccacgattaaggcctgaacctgtttacaaaa--gagagaaatgaagccaaaggctatcctatagcaac-aaaacaa 327  Q
    ||||||||||||||||||||||||  | ||||||||  |||||||||||||| ||  |||||||| |||||||||||||||||||||||||| |||||||    
T  5803247 aaagcaatgaaaataaaatgcaaattaggattaaggtttgaacctgtttacacaatagagagaaaggaagccaaaggctatcctatagcaacaaaaacaa 5803346  T
Q  328 agtgtagcatgcca 341  Q
    || ||||| |||||    
T  5803347 agagtagcctgcca 5803360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 231 - 341
Target Start/End: Original strand, 5806782 - 5806895
Alignment:
Q  231 aaagcaatgaaaataaaatgcaaaccacgattaaggcctgaacctgtttacaaaa--gagagaaatgaagccaaaggctatcctatagcaac-aaaacaa 327  Q
    ||||||||||||||||||||||||  | ||||||||  |||||||||||||| ||  |||||||| |||||||||||||||||||||||||| |||||||    
T  5806782 aaagcaatgaaaataaaatgcaaattaggattaaggtttgaacctgtttacacaatagagagaaaggaagccaaaggctatcctatagcaacaaaaacaa 5806881  T
Q  328 agtgtagcatgcca 341  Q
    || ||||| |||||    
T  5806882 agagtagcctgcca 5806895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 231 - 341
Target Start/End: Original strand, 5810317 - 5810430
Alignment:
Q  231 aaagcaatgaaaataaaatgcaaaccacgattaaggcctgaacctgtttacaaaa--gagagaaatgaagccaaaggctatcctatagcaac-aaaacaa 327  Q
    ||||||||||||||||||||||||  | ||||||||  |||||||||||||| ||  |||||||| |||||||||||||||||||||||||| |||||||    
T  5810317 aaagcaatgaaaataaaatgcaaattaggattaaggtttgaacctgtttacacaatagagagaaaggaagccaaaggctatcctatagcaacaaaaacaa 5810416  T
Q  328 agtgtagcatgcca 341  Q
    || ||||| |||||    
T  5810417 agagtagcctgcca 5810430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 231 - 341
Target Start/End: Original strand, 5813852 - 5813965
Alignment:
Q  231 aaagcaatgaaaataaaatgcaaaccacgattaaggcctgaacctgtttacaaaa--gagagaaatgaagccaaaggctatcctatagcaac-aaaacaa 327  Q
    ||||||||||||||||||||||||  | ||||||||  |||||||||||||| ||  |||||||| |||||||||||||||||||||||||| |||||||    
T  5813852 aaagcaatgaaaataaaatgcaaattaggattaaggtttgaacctgtttacacaatagagagaaaggaagccaaaggctatcctatagcaacaaaaacaa 5813951  T
Q  328 agtgtagcatgcca 341  Q
    || ||||| |||||    
T  5813952 agagtagcctgcca 5813965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 231 - 341
Target Start/End: Original strand, 5817387 - 5817500
Alignment:
Q  231 aaagcaatgaaaataaaatgcaaaccacgattaaggcctgaacctgtttacaaaa--gagagaaatgaagccaaaggctatcctatagcaac-aaaacaa 327  Q
    ||||||||||||||||||||||||  | ||||||||  |||||||||||||| ||  |||||||| |||||||||||||||||||||||||| |||||||    
T  5817387 aaagcaatgaaaataaaatgcaaattaggattaaggtttgaacctgtttacacaatagagagaaaggaagccaaaggctatcctatagcaacaaaaacaa 5817486  T
Q  328 agtgtagcatgcca 341  Q
    || ||||| |||||    
T  5817487 agagtagcctgcca 5817500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 89; Significance: 8e-43; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 230 - 372
Target Start/End: Original strand, 34466622 - 34466761
Alignment:
Q  230 caaagcaatgaaaataaaatgcaaaccacgattaaggcctgaacctgtttacaaaagagagaaatgaagccaaaggctatcctatagcaacaaaacaaag 329  Q
    |||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||   ||||    
T  34466622 caaagcaatgaaaataaaatgcaaaccaggattaaagcatgaacctgtttacaaaagagagaaaggaagccaaaggctatcctataacaacaa---aaag 34466718  T
Q  330 tgtagcatgccaagaaagcatagggctccacatgcccctaaag 372  Q
    |||||| ||| | |||||||||| ||| |||||||||||||||    
T  34466719 tgtagcctgctatgaaagcatagagctgcacatgcccctaaag 34466761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 234 - 356
Target Start/End: Original strand, 51499657 - 51499782
Alignment:
Q  234 gcaatgaaaataaaatgcaaaccacgattaaggcctgaacctgttt--acaaaagagagaaatgaagccaaaggctatcctatagcaac-aaaacaaagt 330  Q
    |||||||||||||||||||||||| |||||||||||||| ||||||  |||||||| ||||| |||||| ||||||||||| || |||| |||||||||     
T  51499657 gcaatgaaaataaaatgcaaaccaggattaaggcctgaatctgtttacacaaaagaaagaaaggaagcctaaggctatcctttatcaacaaaaacaaaga 51499756  T
Q  331 gtagcatgccaagaaagcatagggct 356  Q
    | ||| |||||  |||||| ||||||    
T  51499757 ggagcctgccataaaagcaaagggct 51499782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 238 - 324
Target Start/End: Original strand, 3847675 - 3847763
Alignment:
Q  238 tgaaaataaaatgcaaaccacgattaaggcctgaacctgtttacaaaagaga--gaaatgaagccaaaggctatcctatagcaacaaaa 324  Q
    |||||||||| ||||||| | ||||||||||||| ||||||||||||| |||  |||| |||| | |||||||||||||||||||||||    
T  3847675 tgaaaataaattgcaaactaggattaaggcctgaccctgtttacaaaaaagaaggaaaggaagtctaaggctatcctatagcaacaaaa 3847763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 230 - 321
Target Start/End: Complemental strand, 11536481 - 11536388
Alignment:
Q  230 caaagcaatgaaaataaaatgcaaaccacgattaaggcctgaacctgtttacaaa--agagagaaatgaagccaaaggctatcctatagcaaca 321  Q
    ||||||||| |||||||| | ||||||| |||||||||||||||||||||||| |  ||| ||||| |||||  |||||| |||| ||||||||    
T  11536481 caaagcaataaaaataaattacaaaccatgattaaggcctgaacctgtttacacattagaaagaaaggaagcataaggctttcctttagcaaca 11536388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 86; Significance: 5e-41; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 230 - 363
Target Start/End: Complemental strand, 34484100 - 34483967
Alignment:
Q  230 caaagcaatgaaaataaaatgcaaaccacgattaaggcctgaacctgtttacaaaagagagaaatgaagccaaaggctatcctatagcaacaaaacaaag 329  Q
    |||| |||| ||||||||||||||||||  ||||||| |||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  34484100 caaaacaataaaaataaaatgcaaaccagaattaaggtctgaacctatttacaaaagagagaaaggaagcctaaggctatcctatagcaacaaaacaaag 34484001  T
Q  330 tgtagcatgccaagaaagcatagggctccacatg 363  Q
    |||| ||||||||| ||||||| |||| ||||||    
T  34484000 tgtaacatgccaaggaagcataaggctgcacatg 34483967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 231 - 369
Target Start/End: Complemental strand, 37370646 - 37370508
Alignment:
Q  231 aaagcaatgaaaataaaatgcaaaccacgattaaggcctgaacctgtttacaaaagagagaaatgaagccaaaggctatcctatagcaacaaaacaaagt 330  Q
    |||||||||||||||||||||||| ||  |||||  ||||| ||| |||||||||||| |||| ||||| |||| |||||||||| ||||||||| ||||    
T  37370646 aaagcaatgaaaataaaatgcaaatcagtattaatacctgagcctatttacaaaagagtgaaaggaagctaaagactatcctataacaacaaaactaagt 37370547  T
Q  331 gtagcatgccaagaaagcatagggctccacatgccccta 369  Q
    ||||| |||||| |||| ||| |||| || ||| |||||    
T  37370546 gtagcctgccaataaagaatatggcttcaaatgtcccta 37370508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 260 - 325
Target Start/End: Complemental strand, 38836390 - 38836323
Alignment:
Q  260 attaaggcctgaacctgtttaca--aaagagagaaatgaagccaaaggctatcctatagcaacaaaac 325  Q
    ||||||| |||||||||||||||  ||||||||||| |||||||||||||||||||||||||||||||    
T  38836390 attaaggtctgaacctgtttacacaaaagagagaaaggaagccaaaggctatcctatagcaacaaaac 38836323  T

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Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 242 - 323
Target Start/End: Complemental strand, 39540617 - 39540534
Alignment:
Q  242 aataaaatgcaaaccacgattaaggcctgaacctgttt--acaaaagagagaaatgaagccaaaggctatcctatagcaacaaa 323  Q
    |||||| ||||||||| ||||||||||||||||| |||  |||||||| | ||| |||||| ||||||||||||||||||||||    
T  39540617 aataaattgcaaaccaggattaaggcctgaacctttttacacaaaagaaataaaggaagcctaaggctatcctatagcaacaaa 39540534  T

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Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 259 - 324
Target Start/End: Original strand, 49094359 - 49094426
Alignment:
Q  259 gattaaggcctgaacctgttta--caaaagagagaaatgaagccaaaggctatcctatagcaacaaaa 324  Q
    ||||||||| ||||| ||||||  ||||||||||||| ||| ||||||| ||||||||||||||||||    
T  49094359 gattaaggcttgaacttgtttatacaaaagagagaaaagaaaccaaaggttatcctatagcaacaaaa 49094426  T

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Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 231 - 324
Target Start/End: Original strand, 36863586 - 36863681
Alignment:
Q  231 aaagcaatgaaaataaaatgcaaaccacgattaaggcctgaacctgtttaca--aaagagagaaatgaagccaaaggctatcctatagcaacaaaa 324  Q
    ||||||||| |||||||||||||||||  |||||||||||||| ||||| ||  ||||||||||| |||||||||| |||||||||||||||||||    
T  36863586 aaagcaatggaaataaaatgcaaaccaaaattaaggcctgaacatgtttgcataaaagagagaaaggaagccaaagactatcctatagcaacaaaa 36863681  T

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