View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10104A_low_64 (Length: 377)
Name: NF10104A_low_64
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104A_low_64 |
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Alignment Details
Target: chr8 (Bit Score: 124; Significance: 1e-63; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 154 - 357
Target Start/End: Complemental strand, 1418744 - 1418562
Alignment:
| Q |
154 |
caatttttagcttttaaacaattcaagtcggttcaacaattcatcaaatatgaaccgattccgaacattatattatactaccttttaaacaattcatata |
253 |
Q |
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| T |
1418744 |
caatttttagcttttaaacaattcaagtcggttcaacaattcatcaaatatgaaccggttccgaacattatattata---------------------ta |
1418666 |
T |
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| Q |
254 |
catacgtaaatggatctcttttataaacaacaaattactatctttcaaacaaagattaaagttcagtataacataacatcatatataaatacacgacaat |
353 |
Q |
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| T |
1418665 |
gatacgtaaatggatctcttttataaacaacaaattactatctttgaaacaaagattaaagttcagtataacataacatcatatataaatacacgacaat |
1418566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 12 - 71
Target Start/End: Complemental strand, 1418952 - 1418893
Alignment:
| Q |
12 |
gaatatagtcagtcatatggtgtcaaaggcaatgtgcattgtgaaagaaatacctaaaat |
71 |
Q |
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| T |
1418952 |
gaatatagtcagtcatatggtgtcaaaggcaatgtgcattgtgaaagaaagacctaaaat |
1418893 |
T |
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