View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10104A_low_65 (Length: 377)
Name: NF10104A_low_65
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104A_low_65 |
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Alignment Details
Target: chr7 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 14 - 358
Target Start/End: Complemental strand, 6359447 - 6359103
Alignment:
| Q |
14 |
tactcgtgaatttgagtgactggtgtgtgctgatgacaatcacaatgatggtgccaacaacgaaggtattgctgctggtgttgttggaggcagctgatgt |
113 |
Q |
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| T |
6359447 |
tacttgtgaatttgagtgactggtgtgtgctgatgacaatcacaatgatggtgccaacaacgaaggtattgctgctggtgttgttggaggcagctgatgt |
6359348 |
T |
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| Q |
114 |
acaatgattatgagtggaaaaacgaagggattaggttattggatcgagatttctgtaaagcttgaaggtatcaaacaatatatttaataacgaaataata |
213 |
Q |
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| T |
6359347 |
acaacgattatgagtggaaaaacgaagggattaggttattggatcgagatttctgtaatgcttgaaggtatcaaacaatatatttaataacgaaataata |
6359248 |
T |
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| Q |
214 |
acagtagtagatagagagaattacaaggacgagcttaaattcaaaatgtctctcgtgtttgcatcaattgatttgcagtttctcaatccttttatatatg |
313 |
Q |
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| T |
6359247 |
acagtagtaaatagagagaattacaaggacgagcttaaattcaaaacgtctctcgtgtttgcatcaattgatttgcagtttctcaatccttttatatatg |
6359148 |
T |
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| Q |
314 |
gatatagcttcttgataatctgcatatactcaaggatctgacttc |
358 |
Q |
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| T |
6359147 |
gatatagcttcttgataatctgcatatactcaaggatctgacttc |
6359103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 285 - 358
Target Start/End: Original strand, 32857285 - 32857358
Alignment:
| Q |
285 |
tttgcagtttctcaatccttttatatatggatatagcttcttgataatctgcatatactcaaggatctgacttc |
358 |
Q |
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| T |
32857285 |
tttgcagtttctcaatcattttatggatggaaatagcttcatgagaatctacatatagtcaaggatttgacttc |
32857358 |
T |
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