View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10104A_low_66 (Length: 376)

Name: NF10104A_low_66
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10104A_low_66
NF10104A_low_66
[»] chr8 (6 HSPs)
chr8 (178-376)||(6097594-6097802)
chr8 (71-145)||(6097371-6097445)
chr8 (26-60)||(4259863-4259897)
chr8 (29-70)||(29114096-29114137)
chr8 (27-60)||(40103526-40103559)
chr8 (26-58)||(16973028-16973060)
[»] chr7 (5 HSPs)
chr7 (1-60)||(36528252-36528310)
chr7 (30-60)||(37918684-37918714)
chr7 (19-60)||(1575698-1575739)
chr7 (26-55)||(24029994-24030023)
chr7 (26-55)||(34322081-34322110)
[»] chr6 (3 HSPs)
chr6 (26-68)||(1128476-1128518)
chr6 (27-70)||(31637338-31637381)
chr6 (26-60)||(21874278-21874312)
[»] chr1 (4 HSPs)
chr1 (26-71)||(52164428-52164473)
chr1 (27-59)||(14262779-14262811)
chr1 (26-60)||(50065014-50065048)
chr1 (1-54)||(8893870-8893922)
[»] chr4 (7 HSPs)
chr4 (26-70)||(36993035-36993079)
chr4 (26-60)||(8716447-8716481)
chr4 (26-59)||(19687651-19687684)
chr4 (29-70)||(31261764-31261805)
chr4 (3-60)||(51974751-51974807)
chr4 (26-59)||(52366212-52366245)
chr4 (1-69)||(16556446-16556513)
[»] chr2 (1 HSPs)
chr2 (26-60)||(6866512-6866546)
[»] chr5 (3 HSPs)
chr5 (29-66)||(7608123-7608160)
chr5 (26-55)||(15696216-15696245)
chr5 (28-60)||(13576327-13576359)
[»] chr3 (3 HSPs)
chr3 (26-71)||(39739267-39739312)
chr3 (27-60)||(50381718-50381751)
chr3 (26-54)||(16141410-16141438)
[»] scaffold0204 (1 HSPs)
scaffold0204 (28-60)||(10580-10612)


Alignment Details
Target: chr8 (Bit Score: 122; Significance: 2e-62; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 178 - 376
Target Start/End: Original strand, 6097594 - 6097802
Alignment:
Q  178 tgtgactaattctcatcggctgctaaataaattacttacaaatatttaa----------aggaaagtaattaattacccgtatattgtagagtcctatcc 267  Q
    |||||||||||||||||||||| |||| ||||||| || || |||||||          ||||||||||||||||||||||| ||| | |||||| ||||    
T  6097594 tgtgactaattctcatcggctgttaaacaaattacctataattatttaagggtagtgaaaggaaagtaattaattacccgtagattctggagtcccatcc 6097693  T
Q  268 ggagatattggcgatctcagtgagagcagctttccattgagacactttgtcttcattgcttttgcgctctatctcataatttgcaaatggttccttgtaa 367  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||  ||||||||||||||||||||||||    
T  6097694 ggagatattggcgatctcagtgagagcagctttccattgagacactttgtcttcattgctcttgcgatctatctggtaatttgcaaatggttccttgtaa 6097793  T
Q  368 cttcccgtc 376  Q
    |||||||||    
T  6097794 cttcccgtc 6097802  T

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Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 71 - 145
Target Start/End: Original strand, 6097371 - 6097445
Alignment:
Q  71 tgaggatcaaattctttatcaagagtttttgcatacatgtattaacaaatattatttctagattaaccttgaaaa 145  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||    
T  6097371 tgaggatcaaactctttatcaagagtttttgcatacatgtattaacaaatattttttctagattagccttgaaaa 6097445  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 60
Target Start/End: Complemental strand, 4259897 - 4259863
Alignment:
Q  26 catattgtgcattatcccttatcaaatgagttaag 60  Q
    ||||||||||||||||||||| |||||||||||||    
T  4259897 catattgtgcattatcccttaccaaatgagttaag 4259863  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 70
Target Start/End: Complemental strand, 29114137 - 29114096
Alignment:
Q  29 attgtgcattatcccttatcaaatgagttaaggtcgtgggaa 70  Q
    ||||||||||||||||||||||||||| |||| || ||||||    
T  29114137 attgtgcattatcccttatcaaatgagctaagttcatgggaa 29114096  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 60
Target Start/End: Complemental strand, 40103559 - 40103526
Alignment:
Q  27 atattgtgcattatcccttatcaaatgagttaag 60  Q
    ||||||||||||||||||||||||||||| ||||    
T  40103559 atattgtgcattatcccttatcaaatgagctaag 40103526  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 58
Target Start/End: Complemental strand, 16973060 - 16973028
Alignment:
Q  26 catattgtgcattatcccttatcaaatgagtta 58  Q
    ||||||||||||||||||||| |||||||||||    
T  16973060 catattgtgcattatcccttaacaaatgagtta 16973028  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 36528252 - 36528310
Alignment:
Q  1 ggggttcgaattccgactccctgttcatattgtgcattatcccttatcaaatgagttaag 60  Q
    |||||||||| |||||| |||| | ||||||||||||||||||||| |||||||||||||    
T  36528252 ggggttcgaactccgac-ccctatacatattgtgcattatcccttaccaaatgagttaag 36528310  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 60
Target Start/End: Complemental strand, 37918714 - 37918684
Alignment:
Q  30 ttgtgcattatcccttatcaaatgagttaag 60  Q
    |||||||||||||||||||||||||||||||    
T  37918714 ttgtgcattatcccttatcaaatgagttaag 37918684  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 1575739 - 1575698
Alignment:
Q  19 ccctgttcatattgtgcattatcccttatcaaatgagttaag 60  Q
    |||||| ||||||||| ||||||||||| |||||||||||||    
T  1575739 ccctgtacatattgtgtattatcccttaccaaatgagttaag 1575698  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 55
Target Start/End: Complemental strand, 24030023 - 24029994
Alignment:
Q  26 catattgtgcattatcccttatcaaatgag 55  Q
    ||||||||||||||||||||||||||||||    
T  24030023 catattgtgcattatcccttatcaaatgag 24029994  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 55
Target Start/End: Original strand, 34322081 - 34322110
Alignment:
Q  26 catattgtgcattatcccttatcaaatgag 55  Q
    ||||||||||||||||||||||||||||||    
T  34322081 catattgtgcattatcccttatcaaatgag 34322110  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 68
Target Start/End: Original strand, 1128476 - 1128518
Alignment:
Q  26 catattgtgcattatcccttatcaaatgagttaaggtcgtggg 68  Q
    |||||| ||||||||||||||||||||||||||||||| ||||    
T  1128476 catattatgcattatcccttatcaaatgagttaaggtcatggg 1128518  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 27 - 70
Target Start/End: Complemental strand, 31637381 - 31637338
Alignment:
Q  27 atattgtgcattatcccttatcaaatgagttaaggtcgtgggaa 70  Q
    ||||||||||||||||| || ||||||||||||| |||||||||    
T  31637381 atattgtgcattatcccataccaaatgagttaagctcgtgggaa 31637338  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 60
Target Start/End: Original strand, 21874278 - 21874312
Alignment:
Q  26 catattgtgcattatcccttatcaaatgagttaag 60  Q
    ||||||||||||||||||||| |||||||||||||    
T  21874278 catattgtgcattatcccttaccaaatgagttaag 21874312  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 26 - 71
Target Start/End: Original strand, 52164428 - 52164473
Alignment:
Q  26 catattgtgcattatcccttatcaaatgagttaaggtcgtgggaat 71  Q
    |||||||||||||||| |||| ||||||||||||| ||||||||||    
T  52164428 catattgtgcattatctcttaccaaatgagttaagctcgtgggaat 52164473  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 59
Target Start/End: Original strand, 14262779 - 14262811
Alignment:
Q  27 atattgtgcattatcccttatcaaatgagttaa 59  Q
    |||||||||||||||||||||||||||||||||    
T  14262779 atattgtgcattatcccttatcaaatgagttaa 14262811  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 60
Target Start/End: Complemental strand, 50065048 - 50065014
Alignment:
Q  26 catattgtgcattatcccttatcaaatgagttaag 60  Q
    |||||||||||||||||||||||||||||| ||||    
T  50065048 catattgtgcattatcccttatcaaatgagctaag 50065014  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 8893922 - 8893870
Alignment:
Q  1 ggggttcgaattccgactccctgttcatattgtgcattatcccttatcaaatga 54  Q
    ||||||||||  ||||| |||||| ||||||||||||||||||||| |||||||    
T  8893922 ggggttcgaaccccgac-ccctgtacatattgtgcattatcccttaccaaatga 8893870  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 36993079 - 36993035
Alignment:
Q  26 catattgtgcattatcccttatcaaatgagttaaggtcgtgggaa 70  Q
    |||||||||||||||||||||||||||||| |||| || ||||||    
T  36993079 catattgtgcattatcccttatcaaatgagctaagctcatgggaa 36993035  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 60
Target Start/End: Original strand, 8716447 - 8716481
Alignment:
Q  26 catattgtgcattatcccttatcaaatgagttaag 60  Q
    |||||||||||||||||||||||||||||| ||||    
T  8716447 catattgtgcattatcccttatcaaatgagctaag 8716481  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 59
Target Start/End: Original strand, 19687651 - 19687684
Alignment:
Q  26 catattgtgcattatcccttatcaaatgagttaa 59  Q
    |||||||| |||||||||||||||||||||||||    
T  19687651 catattgtacattatcccttatcaaatgagttaa 19687684  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 70
Target Start/End: Original strand, 31261764 - 31261805
Alignment:
Q  29 attgtgcattatcccttatcaaatgagttaaggtcgtgggaa 70  Q
    |||||||||||||||||||||||||| ||||| || ||||||    
T  31261764 attgtgcattatcccttatcaaatgaattaagctcatgggaa 31261805  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 60
Target Start/End: Complemental strand, 51974807 - 51974751
Alignment:
Q  3 ggttcgaattccgactccctgttcatattgtgcattatcccttatcaaatgagttaag 60  Q
    ||||||||| ||||| |||||  ||||||||||||||||||||| |||||||| ||||    
T  51974807 ggttcgaatcccgac-ccctgcacatattgtgcattatcccttaccaaatgagctaag 51974751  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 59
Target Start/End: Complemental strand, 52366245 - 52366212
Alignment:
Q  26 catattgtgcattatcccttatcaaatgagttaa 59  Q
    ||||||||||||||||||||| ||||||||||||    
T  52366245 catattgtgcattatcccttaccaaatgagttaa 52366212  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 16556513 - 16556446
Alignment:
Q  1 ggggttcgaattccgactccctgttcatattgtgcattatcccttatcaaatgagttaaggtcgtggga 69  Q
    ||||||||||  ||||| |||||  ||||||||||||||||||||| |||||||| |||| || |||||    
T  16556513 ggggttcgaaccccgac-ccctgcacatattgtgcattatcccttaccaaatgagctaagctcatggga 16556446  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 60
Target Start/End: Complemental strand, 6866546 - 6866512
Alignment:
Q  26 catattgtgcattatcccttatcaaatgagttaag 60  Q
    ||||||||||||||||||||| |||||||||||||    
T  6866546 catattgtgcattatcccttaccaaatgagttaag 6866512  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 66
Target Start/End: Original strand, 7608123 - 7608160
Alignment:
Q  29 attgtgcattatcccttatcaaatgagttaaggtcgtg 66  Q
    |||||||||||||| ||||||||||||||||| |||||    
T  7608123 attgtgcattatcctttatcaaatgagttaagctcgtg 7608160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 55
Target Start/End: Complemental strand, 15696245 - 15696216
Alignment:
Q  26 catattgtgcattatcccttatcaaatgag 55  Q
    ||||||||||||||||||||||||||||||    
T  15696245 catattgtgcattatcccttatcaaatgag 15696216  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 60
Target Start/End: Complemental strand, 13576359 - 13576327
Alignment:
Q  28 tattgtgcattatcccttatcaaatgagttaag 60  Q
    ||||||||||||||||||| |||||||||||||    
T  13576359 tattgtgcattatcccttaccaaatgagttaag 13576327  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 71
Target Start/End: Complemental strand, 39739312 - 39739267
Alignment:
Q  26 catattgtgcattatcccttatcaaatgagttaaggtcgtgggaat 71  Q
    ||||||||||||||||||||| |||||||| |||| || |||||||    
T  39739312 catattgtgcattatcccttaccaaatgagctaagctcatgggaat 39739267  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 60
Target Start/End: Complemental strand, 50381751 - 50381718
Alignment:
Q  27 atattgtgcattatcccttatcaaatgagttaag 60  Q
    |||||||||||||||||||| |||||||||||||    
T  50381751 atattgtgcattatcccttaccaaatgagttaag 50381718  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 54
Target Start/End: Original strand, 16141410 - 16141438
Alignment:
Q  26 catattgtgcattatcccttatcaaatga 54  Q
    |||||||||||||||||||||||||||||    
T  16141410 catattgtgcattatcccttatcaaatga 16141438  T

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Target: scaffold0204 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 60
Target Start/End: Complemental strand, 10612 - 10580
Alignment:
Q  28 tattgtgcattatcccttatcaaatgagttaag 60  Q
    |||||||||||||||||||||||||||| ||||    
T  10612 tattgtgcattatcccttatcaaatgagctaag 10580  T

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