View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10104A_low_68 (Length: 372)
Name: NF10104A_low_68
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104A_low_68 |
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Alignment Details
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 113 - 357
Target Start/End: Complemental strand, 51015016 - 51014772
Alignment:
| Q |
113 |
ggtgttgtattggtatagttttcaagtatgtgaaggggcaacataatgtgtatgaagtgagagaggaaacttttagatcatgtgaaacaagtagtggagt |
212 |
Q |
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| T |
51015016 |
ggtgttgtattggtatagttttcaagtatgtgaaggggcaacataatgtgtatgaagtgagagaggaaacttttagatcatgtgaaacaagtagtggagt |
51014917 |
T |
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| Q |
213 |
gttggctaagtatgaaagtggagaagatgaagtggttctgaataaggtgaagaaatattggtttatttgcaatatagctggacattgtcttggaggaatg |
312 |
Q |
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| T |
51014916 |
gttggctaagtatgaaagtggagaagatgaagtggttctgaataaggtgaagaaatattggttcatttgcaatatagctggacattgtcttggaggaatg |
51014817 |
T |
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| Q |
313 |
aggtttgggattgaagtcaaagaagttagcaacaatggtactgat |
357 |
Q |
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| T |
51014816 |
aggtttgggattgaagtcaaagaagttagcaacaatggtactgat |
51014772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 121 - 165
Target Start/End: Complemental strand, 51013517 - 51013473
Alignment:
| Q |
121 |
attggtatagttttcaagtatgtgaaggggcaacataatgtgtat |
165 |
Q |
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| T |
51013517 |
attggtttagttttcaagtatatgaaggggcaacataatgtgtat |
51013473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 119 - 333
Target Start/End: Complemental strand, 1041169 - 1040977
Alignment:
| Q |
119 |
gtattggtatagttttcaagtatgtgaaggggcaacataatgtgtatgaagtgagagaggaaacttttagatcatgtgaaacaagtagtggagtgttggc |
218 |
Q |
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| T |
1041169 |
gtattggtttagttttcaagtatgtgaaggggcaacataatgtgtataaagtgagagaggatatttttcgatcatctg--------------------gc |
1041090 |
T |
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| Q |
219 |
taagtatgaaagtggagaagatgaagtggttctgaataaggtgaagaaatattggtttatttgcaatatagctggacattgtcttggaggaatgaggttt |
318 |
Q |
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| T |
1041089 |
taagtttgagagtgg-gaagatcaagtggttctcaataaggtgaagtgatattg-ttcatttgtaatatagctgggcattgccttggaggaatggggttt |
1040992 |
T |
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