View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10104A_low_70 (Length: 368)
Name: NF10104A_low_70
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104A_low_70 |
 | |
|
| [»] scaffold0279 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0279 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: scaffold0279
Description:
Target: scaffold0279; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 37 - 363
Target Start/End: Complemental strand, 21553 - 21227
Alignment:
| Q |
37 |
aacataaattgaatgtaaacaaaagtacaatgaattacctcccaaaggtctcttgcttgaacaacagtttttggtggaatgccaatgtcatcccaattag |
136 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
21553 |
aacataaattgaatgtcaacaaaagtacaatgaattacctcccaaaggtctcttgcttgaacaacagtttttggtggaatgccaatgtcattccaattag |
21454 |
T |
|
| Q |
137 |
ctgttatatcaatctgcttctgtgggcctctattaaggaacacaacagctaccctgtaacctgaaagaggacctgcccatatctaaccaaaaaagcatgc |
236 |
Q |
| |
|
|||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21453 |
ctgttatatctatatgcttctgtgggcctctattaaggaacacaacagctaccctgtaacctgaaagaggacctgcccatatctaaccaaaaaagcatgc |
21354 |
T |
|
| Q |
237 |
agataagaacaaaaatctttaataaacatattgccaaattattagacaaaatctatataaaagcacagtgtaacgcattcaagggatctcggctgttgat |
336 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21353 |
agataagaacaaaaatctttaataaacatattgccaaattattagacaaaatctatctaaaagcacagtgtaacgcattcaagggatctcggctgttgat |
21254 |
T |
|
| Q |
337 |
taagattttacgccttatattttgact |
363 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
21253 |
taagattttacgccttatattttgact |
21227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 37 - 363
Target Start/End: Complemental strand, 27527672 - 27527346
Alignment:
| Q |
37 |
aacataaattgaatgtaaacaaaagtacaatgaattacctcccaaaggtctcttgcttgaacaacagtttttggtggaatgccaatgtcatcccaattag |
136 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
27527672 |
aacataaattgaatgtcaacaaaagtacaatgaattacctcccaaaggtctcttgcttgaacaacagtttttggtggaatgccaatgtcattccaattag |
27527573 |
T |
|
| Q |
137 |
ctgttatatcaatctgcttctgtgggcctctattaaggaacacaacagctaccctgtaacctgaaagaggacctgcccatatctaaccaaaaaagcatgc |
236 |
Q |
| |
|
|||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27527572 |
ctgttatatctatatgcttctgtgggcctctattaaggaacacaacagctaccctgtaacctgaaagaggacctgcccatatctaaccaaaaaagcatgc |
27527473 |
T |
|
| Q |
237 |
agataagaacaaaaatctttaataaacatattgccaaattattagacaaaatctatataaaagcacagtgtaacgcattcaagggatctcggctgttgat |
336 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27527472 |
agataagaacaaaaatctttaataaacatattgccaaattattagacaaaatctatctaaaagcacagtgtaacgcattcaagggatctcggctgttgat |
27527373 |
T |
|
| Q |
337 |
taagattttacgccttatattttgact |
363 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
27527372 |
taagattttacgccttatattttgact |
27527346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 37 - 281
Target Start/End: Complemental strand, 27533396 - 27533152
Alignment:
| Q |
37 |
aacataaattgaatgtaaacaaaagtacaatgaattacctcccaaaggtctcttgcttgaacaacagtttttggtggaatgccaatgtcatcccaattag |
136 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
27533396 |
aacataaattgaatgtcaacaaaagtacaatgaattacctcccaaaggtctcttgcttgaacaacagtttttggtggaatgccaatgtcattccaattag |
27533297 |
T |
|
| Q |
137 |
ctgttatatcaatctgcttctgtgggcctctattaaggaacacaacagctaccctgtaacctgaaagaggacctgcccatatctaaccaaaaaagcatgc |
236 |
Q |
| |
|
|||||||||| || |||||||| | |||| ||||||| ||||||||||||||||| || |||||||||||||||||||||||||| |||| ||| ||||| |
|
|
| T |
27533296 |
ctgttatatctatatgcttctgagtgcctttattaagcaacacaacagctaccctatatcctgaaagaggacctgcccatatctatccaacaaaacatgc |
27533197 |
T |
|
| Q |
237 |
agataagaacaaaaatctttaataaacatattgccaaattattag |
281 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
27533196 |
agataagaacaaaaatctttaataaacatagtgccaaattattag |
27533152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University