View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10104A_low_72 (Length: 365)
Name: NF10104A_low_72
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104A_low_72 |
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Alignment Details
Target: chr7 (Bit Score: 326; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 359
Target Start/End: Original strand, 39245722 - 39246090
Alignment:
| Q |
1 |
agaagaaaataccaatttgtagtgatgaagctttttggcaatcctgtttttctatccctacagcacatggtggtggtctcagcgttggtagtgatactga |
100 |
Q |
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| T |
39245722 |
agaagaaaataccaatttgtagtgatgaagctttttggcaatcctgtttttctatccctacagcacatggtggtggtctcagcgttggtagtgatactga |
39245821 |
T |
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| Q |
101 |
acgagtcaataaacacattccctacagaaaaaagaa----------cttatcacatctatacttgctaaagtagagatatgactaaaaagatttgcaact |
190 |
Q |
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| T |
39245822 |
aagagtcaataaacacattccctacagaaaaaaaaaaaaaagaagacttatcacatctatacttgctaaagtagagatatgactaaaaagatttgcaact |
39245921 |
T |
|
| Q |
191 |
gcaatttgaatgatgcattgagattttttatgtcacaatgactctaataactgagatatcatgtccgtgagatgtcaatttagtattaagaatttattct |
290 |
Q |
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| T |
39245922 |
gcaatttgaatgatgcattgagattttttatgtcacaatgactctaataactgagatatcatgtccgtgagatgtcaatttagtattaagaatttattct |
39246021 |
T |
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| Q |
291 |
tgtcactttcaatgacataatttatattccatcaaagatggttttaaaatggattaatgagactatatt |
359 |
Q |
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| T |
39246022 |
tgtcactttcaatgacataatttatattccatcaaagatggttttaaaatggattaatgagactatatt |
39246090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 39251724 - 39252036
Alignment:
| Q |
1 |
agaagaaaataccaatttgtagtgatgaagctttttggcaatcctgtttttctatccctacagcacatggtggtggtctcagcgttggtagtgatactga |
100 |
Q |
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| T |
39251724 |
agaagaaaataccaatttgtagtgatgaagctttttggcaatcattgtcttctatcccttgagaacaaggtggtggtctcagcattggtagtgacactgc |
39251823 |
T |
|
| Q |
101 |
acgagtcaataaacacattccctacagaaaaaagaa------cttatcacatctatacttgctaaagtagagatatgactaaaaagatttgcaactgcaa |
194 |
Q |
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| ||||||||||||||||||||| ||| ||||| || ||| |||| | ||||||| | | |||||||||||||||||||||||||||| |
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| T |
39251824 |
aagagtcaataaacacattccctgcaggaaaaaaaaaaaagacttgtcacttttatacttac--------atatatgactaaaaagatttgcaactgcaa |
39251915 |
T |
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| Q |
195 |
tttgaatgatgcattgagattttttatgtcacaatgactctaataactgagatatcatgtccgtgagatgtcaatttagtattaagaattta-ttcttgt |
293 |
Q |
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|||||||||||||||||||||||||| |||||| ||||| ||||| ||||||||||||||| |||||||||||||||||| ||| |||||| || |||| |
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| T |
39251916 |
tttgaatgatgcattgagattttttaagtcacatcgactccaataaatgagatatcatgtccatgagatgtcaatttagtagtaaaaatttattttttgt |
39252015 |
T |
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| Q |
294 |
cactttcaatgacataattta |
314 |
Q |
| |
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|||||| ||||||||| |||| |
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| T |
39252016 |
cactttaaatgacatatttta |
39252036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 39261318 - 39261450
Alignment:
| Q |
1 |
agaagaaaataccaatttgtagtgatgaagctttttggcaatcctgtttttctatccctacagcacatggtggtggtctcagcgttggtagtgatactga |
100 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||| | | |||||||| |||||||| ||||||||||| | ||||||||||||||| |
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| T |
39261318 |
agaagaaaataccaatttgtagcgatgaagctttttggcaatccttgtctgctatcccttgagcacatgctggtggtctcaacattggtagtgatactgt |
39261417 |
T |
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| Q |
101 |
acgagtcaataaacacattccctacagaaaaaa |
133 |
Q |
| |
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|||| ||||||||||| ||||||| |||||| |
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| T |
39261418 |
tagagttaataaacacataccctacataaaaaa |
39261450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 311 - 359
Target Start/End: Original strand, 39252303 - 39252351
Alignment:
| Q |
311 |
tttatattccatcaaagatggttttaaaatggattaatgagactatatt |
359 |
Q |
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|||| ||||||| ||||||||||||||| ||||||||||||||||||| |
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| T |
39252303 |
tttaaattccattgaagatggttttaaaaaggattaatgagactatatt |
39252351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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