View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10104A_low_74 (Length: 364)
Name: NF10104A_low_74
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104A_low_74 |
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Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 111 - 358
Target Start/End: Original strand, 25367171 - 25367418
Alignment:
| Q |
111 |
atctcctacaagaaatccaatcactgaatataattttaaaaattactcaatctactaatttggatattaattagtagattcaatatcaacaacttcagaa |
210 |
Q |
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| T |
25367171 |
atctcctacaagaaatccaatcactgaatatggttttaaaaattactcaatctactaatttggatattaattagtagattcaatatcaacaacttcagaa |
25367270 |
T |
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| Q |
211 |
aacgatgtacaagaaaatcttcatatataaaaccattggaaaatgaccctctcatttcaaaaacagaagaaaatggcaatttgcatgattttgatagtga |
310 |
Q |
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| T |
25367271 |
aacgatgtacaagaaaatcttcatatataaaaccattggaaaatgaccctctcatttcaaaaacagaagaaaatggcaatttacatgattttgatagtga |
25367370 |
T |
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| Q |
311 |
agtagctagcaaggtaatagaaaaatatttaaattacatattcttgga |
358 |
Q |
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| T |
25367371 |
agtagctagcaaggtaatagaaaaatatttaaattacatattcttgga |
25367418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 25367065 - 25367117
Alignment:
| Q |
1 |
tcacacacaattactatttatacatgttccaccaaacatttctccatcaagtg |
53 |
Q |
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| T |
25367065 |
tcacacacaattactatttatacatgttccaccaaacatttctccatcaagtg |
25367117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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